BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0065.p         (58 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2777 [E] COG0169 Shikimate 5-dehydrogenase Rso Ralstonia sola...    86   2e-17
PA0025 [E] COG0169 Shikimate 5-dehydrogenase Pae Pseudomonas aer...    74   9e-14
VC0056 [E] COG0169 Shikimate 5-dehydrogenase Vch Vibrio cholerae       65   5e-11

>RSc2777 [E] COG0169 Shikimate 5-dehydrogenase Rso Ralstonia solanacearum
          Length = 306

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/56 (71%), Positives = 46/56 (82%)

Query: 1   MYGKQPTVFMEFAHRHGAVTRDGLGMLVEQAAEAFLLWRGVRPETAGVFTALRRQL 56
           MYG QPTVFM+FA RHGA   DGLGMLVEQAAE+FL+WRG+RP+TA V  A+R  L
Sbjct: 238 MYGSQPTVFMQFAKRHGARAWDGLGMLVEQAAESFLVWRGMRPDTAPVLQAMREGL 293


>PA0025 [E] COG0169 Shikimate 5-dehydrogenase Pae Pseudomonas aeruginosa
          Length = 274

 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 42/58 (72%), Gaps = 1/58 (1%)

Query: 1   MYGKQPTVFMEFAHRHGAV-TRDGLGMLVEQAAEAFLLWRGVRPETAGVFTALRRQLS 57
           MY K+PT F  +A   GA  T DGLGMLVEQAAEAF LWRGVRP +A V   LRRQL+
Sbjct: 215 MYAKEPTAFNRWAAERGAARTLDGLGMLVEQAAEAFFLWRGVRPASAPVLETLRRQLA 272


>VC0056 [E] COG0169 Shikimate 5-dehydrogenase Vch Vibrio cholerae
          Length = 278

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 41/57 (71%), Gaps = 1/57 (1%)

Query: 1   MYGKQPTVFMEFAHRHG-AVTRDGLGMLVEQAAEAFLLWRGVRPETAGVFTALRRQL 56
           MYGK  TVF ++A +HG A   DGLGMLV QAAE+F+LWRG+RP T  +   LR+ L
Sbjct: 218 MYGKGYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKNL 274