BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0064.p         (93 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC0056 [E] COG0169 Shikimate 5-dehydrogenase Vch Vibrio cholerae      106   2e-23
RSc2777 [E] COG0169 Shikimate 5-dehydrogenase Rso Ralstonia sola...   102   2e-22
ZaroE [E] COG0169 Shikimate 5-dehydrogenase EcZ Escherichia coli...   100   6e-22
ECs4147 [E] COG0169 Shikimate 5-dehydrogenase Ecs Escherichia co...   100   6e-22
aroE [E] COG0169 Shikimate 5-dehydrogenase Eco Escherichia coli K12   100   6e-22

>VC0056 [E] COG0169 Shikimate 5-dehydrogenase Vch Vibrio cholerae
          Length = 278

 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 58/85 (68%)

Query: 1  MDAYVVIGNPIAHSKSPEIHAQFAAQTAQQLSYERLLAPLQGFKAAVKVFIANGGKGANV 60
          +D Y V GNPI HSKSP IH  FA QT Q + Y     P+ GF  A K F A GG+G NV
Sbjct: 5  IDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNV 64

Query: 61 TVPFKLDAHALADRLTERARLAGAV 85
          TVPFK +A+  ADRLTERARLAGAV
Sbjct: 65 TVPFKEEAYRFADRLTERARLAGAV 89


>RSc2777 [E] COG0169 Shikimate 5-dehydrogenase Rso Ralstonia solanacearum
          Length = 306

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 60/85 (70%)

Query: 1   MDAYVVIGNPIAHSKSPEIHAQFAAQTAQQLSYERLLAPLQGFKAAVKVFIANGGKGANV 60
           +D Y VIGNPI+HSKSP IHA FA QT Q + YER+ A L  F   V  FI  GG+G NV
Sbjct: 18  VDRYGVIGNPISHSKSPAIHAAFAQQTGQLMRYERIYAELIAFDETVFSFIREGGRGLNV 77

Query: 61  TVPFKLDAHALADRLTERARLAGAV 85
           TVPFKLDA+ALA  L+ RA  AGAV
Sbjct: 78  TVPFKLDAYALATSLSLRAESAGAV 102


>ZaroE [E] COG0169 Shikimate 5-dehydrogenase EcZ Escherichia coli
          O157:H7 EDL933
          Length = 272

 Score =  100 bits (250), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 59/85 (69%)

Query: 1  MDAYVVIGNPIAHSKSPEIHAQFAAQTAQQLSYERLLAPLQGFKAAVKVFIANGGKGANV 60
          M+ Y V GNPIAHSKSP IH QFA Q   +  Y R+LAP+  F   +  F + GGKGANV
Sbjct: 1  METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFVNTLNAFFSAGGKGANV 60

Query: 61 TVPFKLDAHALADRLTERARLAGAV 85
          TVPFK +A A AD LTERA LAGAV
Sbjct: 61 TVPFKEEAFARADELTERAALAGAV 85


>ECs4147 [E] COG0169 Shikimate 5-dehydrogenase Ecs Escherichia coli
          O157:H7
          Length = 272

 Score =  100 bits (250), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 59/85 (69%)

Query: 1  MDAYVVIGNPIAHSKSPEIHAQFAAQTAQQLSYERLLAPLQGFKAAVKVFIANGGKGANV 60
          M+ Y V GNPIAHSKSP IH QFA Q   +  Y R+LAP+  F   +  F + GGKGANV
Sbjct: 1  METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFVNTLNAFFSAGGKGANV 60

Query: 61 TVPFKLDAHALADRLTERARLAGAV 85
          TVPFK +A A AD LTERA LAGAV
Sbjct: 61 TVPFKEEAFARADELTERAALAGAV 85


>aroE [E] COG0169 Shikimate 5-dehydrogenase Eco Escherichia coli K12
          Length = 272

 Score =  100 bits (250), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 59/85 (69%)

Query: 1  MDAYVVIGNPIAHSKSPEIHAQFAAQTAQQLSYERLLAPLQGFKAAVKVFIANGGKGANV 60
          M+ Y V GNPIAHSKSP IH QFA Q   +  Y R+LAP+  F   +  F + GGKGANV
Sbjct: 1  METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANV 60

Query: 61 TVPFKLDAHALADRLTERARLAGAV 85
          TVPFK +A A AD LTERA LAGAV
Sbjct: 61 TVPFKEEAFARADELTERAALAGAV 85