BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0056.p         (145 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2785 [E] COG0757 3-dehydroquinate dehydratase II Rso Ralstoni...   189   2e-48
PA4846 [E] COG0757 3-dehydroquinate dehydratase II Pae Pseudomon...   178   3e-45
BU399 [E] COG0757 3-dehydroquinate dehydratase II Buc Buchnera s...   164   6e-41
XF0047 [E] COG0757 3-dehydroquinate dehydratase II Xfa Xylella f...   162   3e-40
PM1093 [E] COG0757 3-dehydroquinate dehydratase II Pmu Pasteurel...   161   4e-40

>RSc2785 [E] COG0757 3-dehydroquinate dehydratase II Rso Ralstonia
           solanacearum
          Length = 156

 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/141 (62%), Positives = 114/141 (80%)

Query: 4   NLLLLNGPNLNLLGSREPEVYGSTTLADIEQRASEQASKAGARLSAFQSNHEGALIDRIH 63
           ++L+L+GPNLNLLG+REPE+YG+TTLADI    +E+AS +G  L+ FQSNHEGAL+DRI 
Sbjct: 12  SVLVLHGPNLNLLGTREPEIYGATTLADINAALAERASASGVSLAHFQSNHEGALVDRIQ 71

Query: 64  AARKEGVDAIVINPGGLTHTSVALRDALAGVAIPFVEVHISNIHQREEFRHFSYLSGIAK 123
           AA+ EG+  I+INP   THTSVALRDALAGVAIP++EVH+SN+H+RE FRH SYL+  A 
Sbjct: 72  AAKSEGIAFIIINPAAYTHTSVALRDALAGVAIPYIEVHLSNVHRREPFRHHSYLADQAV 131

Query: 124 AVLCGFGVDGYRLAIDHLLLQ 144
            V+CG G  GY  A+D+++ Q
Sbjct: 132 GVICGLGWRGYLAALDYIVSQ 152


>PA4846 [E] COG0757 3-dehydroquinate dehydratase II Pae Pseudomonas
           aeruginosa
          Length = 147

 Score =  178 bits (452), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 88/141 (62%), Positives = 103/141 (73%)

Query: 4   NLLLLNGPNLNLLGSREPEVYGSTTLADIEQRASEQASKAGARLSAFQSNHEGALIDRIH 63
            LL+L+GPNLNLLG+REP  YGSTTL  I Q    +A +AG  L   QSN E  LIDRIH
Sbjct: 3   TLLVLHGPNLNLLGTREPGTYGSTTLGQINQDLERRAREAGHHLLHLQSNAEYELIDRIH 62

Query: 64  AARKEGVDAIVINPGGLTHTSVALRDALAGVAIPFVEVHISNIHQREEFRHFSYLSGIAK 123
           AAR EGVD I+INP   THTSVALRDAL  V+IPF+EVH+SN+H+RE FRH SY S +A 
Sbjct: 63  AARDEGVDFIIINPAAFTHTSVALRDALLAVSIPFIEVHLSNVHKREPFRHHSYFSDVAV 122

Query: 124 AVLCGFGVDGYRLAIDHLLLQ 144
            V+CG G  GYRLA++  L Q
Sbjct: 123 GVICGLGATGYRLALESALEQ 143


>BU399 [E] COG0757 3-dehydroquinate dehydratase II Buc Buchnera sp. APS
          Length = 150

 Score =  164 bits (415), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 74/137 (54%), Positives = 101/137 (73%), Gaps = 1/137 (0%)

Query: 3   INLLLLNGPNLNLLGSREPEVYGSTTLADIEQRASEQASKAGARLSAFQSNHEGALIDRI 62
           IN+LL+NGPNLNLLG+RE E+YG  TL D+ +   ++A K    L   QSN E  LID+I
Sbjct: 5   INILLINGPNLNLLGTRETEIYGDITLPDLLKNLEKRAKKLNMSLKHIQSNAEHVLIDKI 64

Query: 63  HAARKEGVDAIVINPGGLTHTSVALRDALAGVAIPFVEVHISNIHQREEFRHFSYLSGIA 122
           H++RK  ++ I+INP   THTS+A+RDAL  V IPF+E+HISNI+ RE+FR  S+LS I+
Sbjct: 65  HSSRK-NINYIIINPAAFTHTSIAIRDALIAVEIPFIEIHISNIYSREDFRSHSWLSDIS 123

Query: 123 KAVLCGFGVDGYRLAID 139
           + V+CG G+DGY  A++
Sbjct: 124 QGVICGLGLDGYHWALE 140


>XF0047 [E] COG0757 3-dehydroquinate dehydratase II Xfa Xylella fastidiosa
           9a5c
          Length = 155

 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/136 (60%), Positives = 104/136 (76%)

Query: 4   NLLLLNGPNLNLLGSREPEVYGSTTLADIEQRASEQASKAGARLSAFQSNHEGALIDRIH 63
           +LLLL+GPNLNLLG+REPE+YG  TL  I+   +E+A+ AG  LS+ QSN E  LI+RIH
Sbjct: 10  HLLLLHGPNLNLLGTREPEIYGRITLPQIDAALAERATAAGHGLSSLQSNAEHVLIERIH 69

Query: 64  AARKEGVDAIVINPGGLTHTSVALRDALAGVAIPFVEVHISNIHQREEFRHFSYLSGIAK 123
           A  ++G   I+INPG  THTSVALRDAL  VA+PFVE+H+SN + RE FRH SYL+  A 
Sbjct: 70  ATPEDGTAFILINPGAFTHTSVALRDALLAVALPFVEIHLSNPYTREPFRHHSYLADKAL 129

Query: 124 AVLCGFGVDGYRLAID 139
            V+CGFGVD YR+A++
Sbjct: 130 GVVCGFGVDSYRIALE 145


>PM1093 [E] COG0757 3-dehydroquinate dehydratase II Pmu Pasteurella
           multocida
          Length = 148

 Score =  161 bits (408), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/135 (56%), Positives = 95/135 (70%), Gaps = 1/135 (0%)

Query: 5   LLLLNGPNLNLLGSREPEVYGSTTLADIEQRASEQASKAGARLSAFQSNHEGALIDRIHA 64
           +LLLNGPNLN+LG REP  YGS +L  IEQ     A +    LS FQ+N E  LI++IH 
Sbjct: 7   ILLLNGPNLNMLGVREPTHYGSLSLKTIEQDLQSLAQQYAVELSCFQANSEEKLIEKIHQ 66

Query: 65  ARKEGVDAIVINPGGLTHTSVALRDALAGVAIPFVEVHISNIHQREEFRHFSYLSGIAKA 124
           + ++ +D I+INP   THTSVALRDAL  VAIPFVEVH+SN+H+RE FRH SY S +A+ 
Sbjct: 67  SFQQ-IDFIIINPAAFTHTSVALRDALLAVAIPFVEVHLSNVHKREPFRHHSYFSDVAEG 125

Query: 125 VLCGFGVDGYRLAID 139
           V+CG G  GY  A+ 
Sbjct: 126 VICGLGAKGYEFALQ 140