BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0049.p         (180 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1385 [S] COG0762 Predicted integral membrane protein Rso Rals...   112   4e-25
PA0392 [S] COG0762 Predicted integral membrane protein Pae Pseud...    87   2e-17
yggT [S] COG0762 Predicted integral membrane protein Eco Escheri...    74   2e-13
ZyggT [S] COG0762 Predicted integral membrane protein EcZ Escher...    74   2e-13
ECs3828 [S] COG0762 Predicted integral membrane protein Ecs Esch...    74   2e-13

>RSp1385 [S] COG0762 Predicted integral membrane protein Rso Ralstonia
           solanacearum
          Length = 183

 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 3/158 (1%)

Query: 4   SIFMLIVDAIASVLAGVLLLRFWMQVVQVRPPASVGQFVFQLSDWLVKPLRRIFPGVGGY 63
            I   ++D + ++    LLLR W Q V++ P   + Q +FQL+ WLV PLRRI P  G  
Sbjct: 4   DITRFLLDTLFTLFGAALLLRAWTQAVRLSPRNPLSQSIFQLTGWLVHPLRRIIPATGYI 63

Query: 64  DWASLVGAFLVIL--LSIIAALGFASGFDFQPI-ILFSLVRFFQWIFYGFMATLIIEAIF 120
           DW+SLV A+L  L  L ++ A   AS     P   L +L    +W F   +   I+ AI 
Sbjct: 64  DWSSLVAAYLTALAYLVLLVAARGASPLGLLPFGFLAALFTVLKWGFNVLVWITIVSAIL 123

Query: 121 SWVNPYAPLAPFVRALNEPLLRPLRKVLPLIGNVDLSP 158
           SWV P+AP+A  +  L +PLLRP+R+VLP +G +DLSP
Sbjct: 124 SWVAPHAPMAAVLNTLIDPLLRPIRRVLPPMGGLDLSP 161


>PA0392 [S] COG0762 Predicted integral membrane protein Pae Pseudomonas
           aeruginosa
          Length = 197

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 104/182 (57%), Gaps = 9/182 (4%)

Query: 2   LHSIFMLIVDAIASVLAGVLLLRFWMQVVQVRPPASVGQFVFQLSDWLVKPLRRIFPGVG 61
           L++  + I+  + S+   ++LLRF +Q+V+      + QF+ + +  L+ PLRRI PG G
Sbjct: 4   LNTAAIYILQTLGSLYLLIVLLRFILQLVRADFYNPLSQFIVRATKPLLNPLRRIIPGFG 63

Query: 62  GYDWASLVGAFLV---ILLSIIAALGFASGFDFQPIILFSLVRFFQWIFYGFMATLIIEA 118
           G D ASLV A L+   +++ I+  +G+  G     ++++S++         F   LII  
Sbjct: 64  GIDLASLVLAILIQLVLMILILMLMGYGVGGFIMQLLIWSIIAVTSLFLKVFFFALIISV 123

Query: 119 IFSWVNP--YAPLAPFVRALNEPLLRPLRKVLPLIGNVDLSPLAALILLQIAVRLVSTLI 176
           I SWV P  Y P A  V  + EPLL P RK+LP +G +DLSP+ A     +A++L+  L+
Sbjct: 124 ILSWVAPGSYNPGAQLVNQICEPLLMPFRKLLPNLGGLDLSPIFAF----LALKLIDMLV 179

Query: 177 LS 178
           ++
Sbjct: 180 IN 181


>yggT [S] COG0762 Predicted integral membrane protein Eco Escherichia
           coli K12
          Length = 188

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 5/161 (3%)

Query: 9   IVDAIASVLAGVLLLRFWMQVVQVRPPASVGQFVFQLSDWLVKPLRRIFPGVGGYDWASL 68
           ++  +  +   VLLLR WMQ           QFV +++  ++ PLRR+ P +G  D ASL
Sbjct: 7   LLSTVIELYTMVLLLRIWMQWAHCDFYNPFSQFVVKVTQPIIGPLRRVIPAMGPIDSASL 66

Query: 69  VGAFLVILLSIIAALGFASGFDFQPII-LFSLVRFFQWIFYGFMATLIIEAIFSWVNP-Y 126
           + A+   +LS I A+       F PII +  L+   + I       L++ AI SWV+   
Sbjct: 67  LVAY---ILSFIKAIVLFKVVTFLPIIWIAGLLILLKTIGLLIFWVLLVMAIMSWVSQGR 123

Query: 127 APLAPFVRALNEPLLRPLRKVLPLIGNVDLSPLAALILLQI 167
           +P+   +  L +PLLRP+R++LP +G +D SP+  ++LL +
Sbjct: 124 SPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVLLLYV 164


>ZyggT [S] COG0762 Predicted integral membrane protein EcZ Escherichia
           coli O157:H7 EDL933
          Length = 188

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 5/161 (3%)

Query: 9   IVDAIASVLAGVLLLRFWMQVVQVRPPASVGQFVFQLSDWLVKPLRRIFPGVGGYDWASL 68
           ++  +  +   VLLLR WMQ           QFV +++  ++ PLRR+ P +G  D ASL
Sbjct: 7   LLSTVIELYTMVLLLRIWMQWAHCDFYNPFSQFVVKVTQPIIGPLRRVIPAMGPIDSASL 66

Query: 69  VGAFLVILLSIIAALGFASGFDFQPII-LFSLVRFFQWIFYGFMATLIIEAIFSWVNP-Y 126
           + A+   +LS I A+       F PII +  L+   + I       L++ AI SWV+   
Sbjct: 67  LVAY---ILSFIKAIVLFKVVTFLPIIWIAGLLILLKTIGLLIFWVLLVMAIMSWVSQGR 123

Query: 127 APLAPFVRALNEPLLRPLRKVLPLIGNVDLSPLAALILLQI 167
           +P+   +  L +PLLRP+R++LP +G +D SP+  ++LL +
Sbjct: 124 SPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVLLLYV 164


>ECs3828 [S] COG0762 Predicted integral membrane protein Ecs Escherichia
           coli O157:H7
          Length = 188

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 5/161 (3%)

Query: 9   IVDAIASVLAGVLLLRFWMQVVQVRPPASVGQFVFQLSDWLVKPLRRIFPGVGGYDWASL 68
           ++  +  +   VLLLR WMQ           QFV +++  ++ PLRR+ P +G  D ASL
Sbjct: 7   LLSTVIELYTMVLLLRIWMQWAHCDFYNPFSQFVVKVTQPIIGPLRRVIPAMGPIDSASL 66

Query: 69  VGAFLVILLSIIAALGFASGFDFQPII-LFSLVRFFQWIFYGFMATLIIEAIFSWVNP-Y 126
           + A+   +LS I A+       F PII +  L+   + I       L++ AI SWV+   
Sbjct: 67  LVAY---ILSFIKAIVLFKVVTFLPIIWIAGLLILLKTIGLLIFWVLLVMAIMSWVSQGR 123

Query: 127 APLAPFVRALNEPLLRPLRKVLPLIGNVDLSPLAALILLQI 167
           +P+   +  L +PLLRP+R++LP +G +D SP+  ++LL +
Sbjct: 124 SPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVLLLYV 164