BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0046.p         (175 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2805 [F] COG0209 Ribonucleotide reductase, alpha subunit Rso ...   264   8e-71
PA1156 [F] COG0209 Ribonucleotide reductase, alpha subunit Pae P...   202   3e-52
CT827 [F] COG0209 Ribonucleotide reductase, alpha subunit Ctr Ch...   145   5e-35
CPn0984 [F] COG0209 Ribonucleotide reductase, alpha subunit Cpn ...   139   3e-33
VNG2384G [F] COG0209 Ribonucleotide reductase, alpha subunit Hbs...   117   9e-27

>RSc2805 [F] COG0209 Ribonucleotide reductase, alpha subunit Rso Ralstonia
           solanacearum
          Length = 987

 Score =  264 bits (674), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 131/175 (74%), Positives = 146/175 (83%)

Query: 1   VRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKW 60
           VRDLKARGLWDEVM++DLKYFDGSLA+IDRIPQDLRD+YATAFEVEP WLVEAASRRQKW
Sbjct: 813 VRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASRRQKW 872

Query: 61  IDQAQSLNIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSKTGALNAVAV 120
           IDQAQSLNIYMAGASGK LD+TYKLAWLRGLKTTYYLRTIGATH EKST   G LNAV+ 
Sbjct: 873 IDQAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVSRGTLNAVSS 932

Query: 121 DGGVSHSAAAASAPASMTASAASMATVAAAEVEADGAACYLRPGDDGFEECEACQ 175
                  AAA +AP +  ++  ++A  A A  +A+GA C +RPGD GFEECEACQ
Sbjct: 933 GSDAGSVAAAGAAPVAPASALDTVAATAPAMPDAEGAVCTMRPGDPGFEECEACQ 987


>PA1156 [F] COG0209 Ribonucleotide reductase, alpha subunit Pae Pseudomonas
           aeruginosa
          Length = 963

 Score =  202 bits (514), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 92/123 (74%), Positives = 108/123 (87%)

Query: 1   VRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKW 60
           VRDLKARGLWD VM++DLKY+DGS+ +I+RIPQDL+D+YATAFEVE  W+VEAASRRQKW
Sbjct: 810 VRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVEAASRRQKW 869

Query: 61  IDQAQSLNIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSKTGALNAVAV 120
           IDQAQSLN+Y+AGASGK+LD TY++AW RGLKTTYYLR + AT TEKST  TG LNAV+ 
Sbjct: 870 IDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATSTEKSTINTGKLNAVSA 929

Query: 121 DGG 123
            G 
Sbjct: 930 GGN 932


>CT827 [F] COG0209 Ribonucleotide reductase, alpha subunit Ctr Chlamydia
            trachomatis
          Length = 1047

 Score =  145 bits (365), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 78/175 (44%), Positives = 97/175 (55%), Gaps = 23/175 (13%)

Query: 1    VRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKW 60
            +  LK  G+WD  M+ DLKYFDGSL +I+RIP  L+ I+ TAFE+EP W++E ASRRQKW
Sbjct: 896  IEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECASRRQKW 955

Query: 61   IDQAQSLNIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSKTGALNAVAV 120
            ID  QSLN+Y+A   GK+L   Y  AW +GLKTTYYLR+  AT  EKS      +N   +
Sbjct: 956  IDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVD---INKRGI 1012

Query: 121  DGGVSHSAAAASAPASMTASAASMATVAAAEVEADGAACYLRPGDDGFEECEACQ 175
                         P  M   +AS   +   E       C L  G      CEACQ
Sbjct: 1013 Q------------PRWMKNKSASAGII--VERAKKAPVCSLEEG------CEACQ 1047


>CPn0984 [F] COG0209 Ribonucleotide reductase, alpha subunit Cpn Chlamydophila
            pneumoniae CWL029
          Length = 1044

 Score =  139 bits (350), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/108 (57%), Positives = 78/108 (72%)

Query: 1    VRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKW 60
            ++ LK  GLWD  M+ DLKYFDGSL +I+RIP  L+ ++ TAFE+EP W++E  SRRQKW
Sbjct: 894  IKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSRRQKW 953

Query: 61   IDQAQSLNIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKS 108
            ID   SLN+Y+A   GK+L   Y  AW +GLKTTYYLR+  AT  EKS
Sbjct: 954  IDMGVSLNLYLAEPDGKKLSNMYLTAWKKGLKTTYYLRSQAATSVEKS 1001


>VNG2384G [F] COG0209 Ribonucleotide reductase, alpha subunit Hbs
           Halobacterium sp. NRC-1
          Length = 804

 Score =  117 bits (294), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 52/109 (47%), Positives = 76/109 (69%)

Query: 1   VRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKW 60
           V DL+ R LW E +   L Y DGS+ ++D +P+D++++Y TAFE++P   +  A+RR  W
Sbjct: 658 VADLEERDLWTEELRDKLTYHDGSVQELDAVPEDVQELYRTAFEIDPRHQLRLAARRGVW 717

Query: 61  IDQAQSLNIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKST 109
           IDQ+QS+N++     G +L E Y+ AW  GLKTTYYLRT+GA+  EK+T
Sbjct: 718 IDQSQSVNVFFPETDGSKLSEVYQTAWELGLKTTYYLRTLGASQIEKTT 766