BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0039.p (261 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO2287 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 330 2e-90 MK0602 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp... 200 3e-51 AGpT116 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 176 6e-44 PA3443 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp... 167 3e-41 YPO0184 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 163 4e-40 >YPO2287 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Ype Yersinia pestis Length = 273 Score = 330 bits (846), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 173/261 (66%), Positives = 210/261 (80%) Query: 1 LLVPVAVIAIWQAASSLGWINPLVLPSPWAVVHKWFEYAAPLKPYDPAEGNWLAWLFSGE 60 +++P V+ +WQ + GWI P +LPSP AVV +WF+Y P + Y+P NWL W SGE Sbjct: 13 VIMPTIVLLMWQMLAISGWIQPTILPSPVAVVVRWFDYFLPYEAYNPETSNWLMWSLSGE 72 Query: 61 LLMDAIGSLYRVVVGFLIGAGLALPLGLLMGSSQRVYGLMNLTVQVIRPIPPIAYIPLAI 120 LL DA S+YRV++GFLIGA LALPLGL +GSS+ LMN +Q +RPIPPIAYIPLA+ Sbjct: 73 LLHDAWASIYRVIIGFLIGALLALPLGLWVGSSKIGNDLMNPLIQFLRPIPPIAYIPLAM 132 Query: 121 LWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQRTLFVRVMLPAA 180 LWFGLGNPPA FLIS+GAFFP+L+NTIAGVR VD IY+ AARNLGA Q T+F R++LPAA Sbjct: 133 LWFGLGNPPAFFLISIGAFFPILINTIAGVRNVDGIYILAARNLGAGQATMFRRIILPAA 192 Query: 181 VPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLA 240 PYIL+G+R+GIGTAFI VIVAEMIAV++G+G+RI+EAREY WSDK+IAGM TIG LGL Sbjct: 193 TPYILTGMRVGIGTAFICVIVAEMIAVNSGVGYRILEAREYMWSDKVIAGMFTIGFLGLV 252 Query: 241 IDLGMSRLNNYMLRWHRGLEN 261 IDL M RLN +LRWHRG+ N Sbjct: 253 IDLCMDRLNRRLLRWHRGIGN 273 >MK0602 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Mka Methanopyrus kandleri AV19 Length = 251 Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 121/253 (47%), Positives = 167/253 (66%), Gaps = 19/253 (7%) Query: 4 PVAVIAIWQAASSLGWINPLVLPSPWAVVHKWFEYAAPLKPYDPAEGNWLAWLFSGELLM 63 PVAV+AIWQA S LG INP++LP P V + E GE+L Sbjct: 18 PVAVLAIWQAVSGLGLINPVLLPPPSQVFSVFVE-------------------MPGEILK 58 Query: 64 DAIGSLYRVVVGFLIGAGLALPLGLLMGSSQRVYGLMNLTVQVIRPIPPIAYIPLAILWF 123 A+ SLYRV VG+ I A + LG+LMG+ + + M+L +++IRPIPPIA+IPLAI+WF Sbjct: 59 HALTSLYRVAVGYSIAAVAGVSLGVLMGTYRTAHAAMDLLIEIIRPIPPIAWIPLAIVWF 118 Query: 124 GLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQRTLFVRVMLPAAVPY 183 G+G+P A F+I +G+FFP+L+NTI+G+R VD IY+ AA NLGA L V++P A+P Sbjct: 119 GIGDPSAFFIIFVGSFFPILINTISGIRSVDRIYVEAALNLGADDTALIRHVLVPGALPN 178 Query: 184 ILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLAIDL 243 I +G+R+G+G ++ V+ AEMIA +GLG+ I+EA+ +D++IAGMITIGLLGL +D Sbjct: 179 IFTGLRVGLGVGWMCVVAAEMIAAKSGLGYMIIEAQRILATDQVIAGMITIGLLGLVMDR 238 Query: 244 GMSRLNNYMLRWH 256 G L L W Sbjct: 239 GFRYLERRALVWR 251 >AGpT116 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 313 Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 101/256 (39%), Positives = 150/256 (58%), Gaps = 17/256 (6%) Query: 5 VAVIAIWQAASSLGWINPLVLPSPWAVVHKWFEYAAPLKPYDPAEGNWLAWLFSGELLMD 64 VA++ +WQ A G + P++LP+P +V + SGEL Sbjct: 73 VALVTVWQVACDFGAVRPVLLPAPSTIVRTIWNMT-----------------LSGELAEH 115 Query: 65 AIGSLYRVVVGFLIGAGLALPLGLLMGSSQRVYGLMNLTVQVIRPIPPIAYIPLAILWFG 124 S RV+ GF I A LAL LG++MG + L +L VQV++PIPPIA+IPL+ILWFG Sbjct: 116 VAVSSARVLQGFGIAAVLALALGIVMGLIGPLNRLADLMVQVLKPIPPIAWIPLSILWFG 175 Query: 125 LGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQRTLFVRVMLPAAVPYI 184 +G +F+I LGAFFP+L++T+ V Q D Y+ AR L + +VM+P A+P I Sbjct: 176 IGEEAKIFIIVLGAFFPILVSTLDAVHQTDVRYVELARVLEVPRLNFIRQVMIPGALPQI 235 Query: 185 LSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLAIDLG 244 +SG+R+GI +++ V+ AE+IA S+G+GF IM+ R + ++AGMIT+G+LG D Sbjct: 236 MSGLRLGITMSWMCVVAAELIAASSGIGFLIMDGRVMSNASVVLAGMITLGVLGKLTDDA 295 Query: 245 MSRLNNYMLRWHRGLE 260 + ++RW G Sbjct: 296 LRFAERRLVRWRAGFS 311 >PA3443 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Pae Pseudomonas aeruginosa Length = 262 Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 97/254 (38%), Positives = 146/254 (57%), Gaps = 17/254 (6%) Query: 3 VPVAVIAIWQAASSLGWINPLVLPSPWAVVHKWFEYAAPLKPYDPAEGNWLAWLFSGELL 62 +P+ ++A+WQAA GW++ +LP+P AV+ E W A L SGE+ Sbjct: 16 LPLVLLAVWQAAVEFGWLSSRILPAPSAVL----------------EAGW-ALLRSGEIW 58 Query: 63 MDAIGSLYRVVVGFLIGAGLALPLGLLMGSSQRVYGLMNLTVQVIRPIPPIAYIPLAILW 122 S +R +GFLIG + L LG + G S+ ++ +VQ+IR +P +A IPL ILW Sbjct: 59 QHLAISGWRAAIGFLIGGAIGLVLGFVTGLSKWGERFLDSSVQMIRNVPHLALIPLVILW 118 Query: 123 FGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQRTLFVRVMLPAAVP 182 FG+ +FL++LG FP+ +NT G+R +D L AR+ G S LF +V+LP A+P Sbjct: 119 FGIDESAKIFLVALGTLFPIYLNTYHGIRGIDPGLLEMARSYGLSGFALFRQVILPGALP 178 Query: 183 YILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLAID 242 IL GVR +G ++ +IVAE I+ S+G+G+ M ARE+ +D ++ ++ +LG D Sbjct: 179 SILVGVRFALGFMWLTLIVAETISASSGIGYLAMNAREFLQTDVVVLAILLYAVLGKLAD 238 Query: 243 LGMSRLNNYMLRWH 256 L L LRWH Sbjct: 239 LAARGLERVWLRWH 252 >YPO0184 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Ype Yersinia pestis Length = 284 Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 147/251 (58%), Gaps = 12/251 (4%) Query: 6 AVIAIWQAASSLGWINPLVLPSPWAVVHKWFEYAAPLKPYDPAEGNWLAWLFSGELLMDA 65 +V+A+W A ++L I PL LP+P V+H+ + A+P D LA Sbjct: 42 SVVALWWAVTALQLIGPLFLPAPQQVLHQLWTIASPQGFMDATLWQHLA----------- 90 Query: 66 IGSLYRVVVGFLIGAGLALPLGLLMGSSQRVYGLMNLTVQVIRPIPPIAYIPLAILWFGL 125 SL R+ V L L +P G+ MG + V G+++ +++ RP+PP+AY+PL ++WFG+ Sbjct: 91 -ASLGRIFVALLAAVVLGVPTGIAMGLNSNVRGVLDPLIEIYRPVPPLAYLPLMVIWFGI 149 Query: 126 GNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQRTLFVRVMLPAAVPYIL 185 G + LI L F PV + +AGVR V + +RAAR LGAS+ + V+LP+A+P IL Sbjct: 150 GETSKILLIYLAIFAPVTLAAVAGVRSVAHVRVRAARALGASRWQVLWFVVLPSALPEIL 209 Query: 186 SGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLAIDLGM 245 +G+RIG+G + ++ AE+IA + GLGF + A E+ +D +IAG+ I ++ ++L + Sbjct: 210 TGIRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVIAGISVIAIIAFGMELSL 269 Query: 246 SRLNNYMLRWH 256 + + W+ Sbjct: 270 RAIQRRLTPWY 280