BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0035.p         (85 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2811 [U] COG0541 Signal recognition particle GTPase Rso Ralst...   132   2e-31
NMA2190 [U] COG0541 Signal recognition particle GTPase NmA Neiss...    97   6e-21
YPO3296 [U] COG0541 Signal recognition particle GTPase Ype Yersi...    97   1e-20
NMB0295 [U] COG0541 Signal recognition particle GTPase Nme Neiss...    96   1e-20
PA3746 [U] COG0541 Signal recognition particle GTPase Pae Pseudo...    91   4e-19

>RSc2811 [U] COG0541 Signal recognition particle GTPase Rso Ralstonia
           solanacearum
          Length = 476

 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 72/76 (94%)

Query: 1   MDQAEKQVRRMEGMINSMTLQERAKPELIKATRKRRIAAGAGVQVQEVNRMLAQFEQMQS 60
           MDQA+KQVRRMEG+INSMT  ERAKPELIKA+RKRRIAAGAGV VQEVNR+L QFEQMQ+
Sbjct: 385 MDQADKQVRRMEGIINSMTPAERAKPELIKASRKRRIAAGAGVPVQEVNRLLNQFEQMQT 444

Query: 61  MMKKLKGGGMMKMMRS 76
           MMKKLKGGGMMKMMR+
Sbjct: 445 MMKKLKGGGMMKMMRA 460


>NMA2190 [U] COG0541 Signal recognition particle GTPase NmA Neisseria
           meningitidis Z2491
          Length = 456

 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 63/87 (72%), Gaps = 6/87 (6%)

Query: 4   AEKQVRRMEGMINSMTLQERAKPELIKATRKRRIAAGAGVQVQEVNRMLAQFEQMQSMMK 63
           AEK + ++E +INSMT +ERA P L+KA+RKRRIA GAG  VQEVN++L QFEQMQ MMK
Sbjct: 370 AEKAMGKVEAIINSMTPKERANPALLKASRKRRIAMGAGTTVQEVNKLLKQFEQMQQMMK 429

Query: 64  KLKGGGMMKMMR------SMKGMMPGM 84
              G G+ K+MR       MKGM PG+
Sbjct: 430 MFSGNGLGKLMRLAKGMKGMKGMFPGL 456


>YPO3296 [U] COG0541 Signal recognition particle GTPase Ype Yersinia pestis
          Length = 453

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/66 (68%), Positives = 57/66 (86%)

Query: 5   EKQVRRMEGMINSMTLQERAKPELIKATRKRRIAAGAGVQVQEVNRMLAQFEQMQSMMKK 64
           +K   RME +INSMTL+ERAKPE+IK +RKRRIA G+GVQVQ+VNR+L QF++MQ MMKK
Sbjct: 370 DKVTVRMEAIINSMTLKERAKPEIIKGSRKRRIATGSGVQVQDVNRLLKQFDEMQRMMKK 429

Query: 65  LKGGGM 70
           +K GG+
Sbjct: 430 MKNGGL 435


>NMB0295 [U] COG0541 Signal recognition particle GTPase Nme Neisseria
           meningitidis MC58
          Length = 456

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 63/87 (72%), Gaps = 6/87 (6%)

Query: 4   AEKQVRRMEGMINSMTLQERAKPELIKATRKRRIAAGAGVQVQEVNRMLAQFEQMQSMMK 63
           AEK + ++E +INSMT +ERA P L+KA+RKRRIA GAG  VQEVN++L QFEQMQ MMK
Sbjct: 370 AEKAMGKVEAIINSMTPKERANPALLKASRKRRIAMGAGTTVQEVNKLLKQFEQMQQMMK 429

Query: 64  KLKGGGMMKM------MRSMKGMMPGM 84
              G G+ K+      MR +KGM PG+
Sbjct: 430 MFSGNGLGKLMRMAKGMRGIKGMFPGL 456


>PA3746 [U] COG0541 Signal recognition particle GTPase Pae Pseudomonas
           aeruginosa
          Length = 457

 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/81 (59%), Positives = 59/81 (72%), Gaps = 1/81 (1%)

Query: 4   AEKQVRRMEGMINSMTLQERAKPELIKATRKRRIAAGAGVQVQEVNRMLAQFEQMQSMMK 63
           AEKQ ++ME +INSMT  ER  PE+I  +RKRRIA G+G QVQ+V R++ Q +QMQ MMK
Sbjct: 372 AEKQFKQMEAIINSMTPGERRDPEMISGSRKRRIALGSGTQVQDVGRLIKQHKQMQKMMK 431

Query: 64  KLKG-GGMMKMMRSMKGMMPG 83
           K+   GGM KMMR M  M PG
Sbjct: 432 KVTAKGGMAKMMRGMGSMFPG 452