BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0034.p         (76 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CT460 [B] COG5531 SWIB-domain-containing proteins implicated in ...   100   9e-22
CPn0577 Non COG                                                        88   5e-18
CT643_3 [B] COG5531 SWIB-domain-containing proteins implicated i...    78   6e-15
YMR233w [B] COG5531 SWIB-domain-containing proteins implicated i...    77   9e-15
YOR295w [B] COG5531 SWIB-domain-containing proteins implicated i...    77   1e-14

>CT460 [B] COG5531 SWIB-domain-containing proteins implicated in
          chromatin remodeling Ctr Chlamydia trachomatis
          Length = 86

 Score =  100 bits (249), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 60/75 (80%)

Query: 1  MKPLTPSAALAEVVGAKPLPRTEVTKKVWEYIKKHNLQNPENKRNIDADDKLKVVFGGKK 60
          M+P+  SA LA +VGA P+PRTE+ KK+W+YIKK+ LQ+P NKRNI+ DDKL  VFG +K
Sbjct: 10 MQPVNVSADLAAIVGAGPMPRTEIIKKMWDYIKKNGLQDPTNKRNINPDDKLAKVFGTEK 69

Query: 61 QVSMFEMTKLISGHL 75
           + MF+MTK++S H+
Sbjct: 70 PIDMFQMTKMVSQHI 84


>CPn0577 Non COG
          Length = 87

 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 51/75 (68%)

Query: 1  MKPLTPSAALAEVVGAKPLPRTEVTKKVWEYIKKHNLQNPENKRNIDADDKLKVVFGGKK 60
          M P+  S  LA +VG  P+PRTE+ KKVWEYIKKHN Q+ +NKRNI  D  L  VFG   
Sbjct: 11 MHPVNISTDLAVIVGKGPMPRTEIVKKVWEYIKKHNCQDQKNKRNILPDANLAKVFGSSD 70

Query: 61 QVSMFEMTKLISGHL 75
           + MF+MTK +S H+
Sbjct: 71 PIDMFQMTKALSKHI 85


>CT643_3 [B] COG5531 SWIB-domain-containing proteins implicated in chromatin
           remodeling Ctr Chlamydia trachomatis
          Length = 122

 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 1/74 (1%)

Query: 2   KPLTPSAALAEVVGAKPLPRTEVTKKVWEYIKKHNLQNPENKRNIDADDKLKVVFGGKKQ 61
           K  TPSAALA V+GA P+ R E TKK+WEYIK+  LQ+P+NK+ I  D KL+ V G    
Sbjct: 46  KAYTPSAALAAVIGADPVGRPEATKKLWEYIKEKGLQSPQNKKIIIPDSKLQGVIGA-DP 104

Query: 62  VSMFEMTKLISGHL 75
           + MF ++K +S HL
Sbjct: 105 IDMFALSKKLSAHL 118


>YMR233w [B] COG5531 SWIB-domain-containing proteins implicated in chromatin
           remodeling Sce Saccharomyces cerevisiae
          Length = 226

 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 54/69 (78%), Gaps = 2/69 (2%)

Query: 7   SAALAEVVGAKPLPRTEVTKKVWEYIKKHNLQNPENKRNIDADDKLKVVFGGKKQVSMFE 66
           SA L + +G++ LPRT+V K +W+YIK+H+LQNP+++R I  D+K++ +FG  K+++MF 
Sbjct: 127 SAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFG--KKMTMFS 184

Query: 67  MTKLISGHL 75
           M KL++ HL
Sbjct: 185 MNKLLTKHL 193


>YOR295w [B] COG5531 SWIB-domain-containing proteins implicated in chromatin
           remodeling Sce Saccharomyces cerevisiae
          Length = 228

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 2/74 (2%)

Query: 2   KPLTPSAALAEVVGAKPLPRTEVTKKVWEYIKKHNLQNPENKRNIDADDKLKVVFGGKKQ 61
           + +T S +LA ++G   L RTEV +++W YIK HNLQNP NK+ I  D+KL+++ G  K 
Sbjct: 122 RKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG--KS 179

Query: 62  VSMFEMTKLISGHL 75
            +MFEM K+++ H+
Sbjct: 180 TNMFEMHKILASHM 193