BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0031.p (224 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2816 [J] COG0442 Prolyl-tRNA synthetase Rso Ralstonia solanac... 342 4e-94 PA0956 [J] COG0442 Prolyl-tRNA synthetase Pae Pseudomonas aerugi... 288 7e-78 PM1370 [J] COG0442 Prolyl-tRNA synthetase Pmu Pasteurella multocida 275 6e-74 YPO1068 [J] COG0442 Prolyl-tRNA synthetase Ype Yersinia pestis 265 6e-71 STM0242 [J] COG0442 Prolyl-tRNA synthetase Sty Salmonella typhim... 264 1e-70 >RSc2816 [J] COG0442 Prolyl-tRNA synthetase Rso Ralstonia solanacearum Length = 574 Score = 342 bits (876), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 169/224 (75%), Positives = 190/224 (84%) Query: 1 VADRTVANMSDFVCGANEVDFHFTGANWDRDLPEPVVADIRNVVEGDASPDGKGVLAIQR 60 VADRTVA MSDFV GANE DFH+TG NW RDLPE V D+RNVVEGD SPDGKG LAI R Sbjct: 350 VADRTVAAMSDFVVGANEEDFHYTGVNWGRDLPEAEVYDLRNVVEGDPSPDGKGTLAICR 409 Query: 61 GIEVGHVFQLGTAYSESMKATYLDEAGKPQPLQMGCYGIGVTRILGAAIEQNFDDKGIIW 120 GIEVGHVF LGT YSESM AT+LDE GK QP+ MGCYGIG+TRILGAAIEQN+D +GIIW Sbjct: 410 GIEVGHVFMLGTRYSESMSATFLDENGKTQPMMMGCYGIGITRILGAAIEQNYDARGIIW 469 Query: 121 PATLAPFEVVLCPMGYDRSEAVKAEIDKLYDALVAAGVDVILDDRGERPGAMFADWELIG 180 P ++APFEVV+CP+GYDRSEAV+AE D+L+ L AAG+DVILDDRGERPGAMFADWELIG Sbjct: 470 PVSIAPFEVVICPVGYDRSEAVRAEADRLHAELAAAGIDVILDDRGERPGAMFADWELIG 529 Query: 181 VPHRVVIGDRGLKDGQIEYQGRRDTAATPVPLVDALAFIKGKLA 224 VP RVV+G+RGLKDG++E QGRRD AA V D LA +K +LA Sbjct: 530 VPFRVVVGERGLKDGKLELQGRRDEAAAAVAPADVLATLKSRLA 573 >PA0956 [J] COG0442 Prolyl-tRNA synthetase Pae Pseudomonas aeruginosa Length = 571 Score = 288 bits (737), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 135/226 (59%), Positives = 174/226 (76%), Gaps = 3/226 (1%) Query: 1 VADRTVANMSDFVCGANEVDFHFTGANWDRDLPEPVVADIRNVVEGDASPDGKGVLAIQR 60 + DR+VA MSDF GAN D H+ G NW+RDLP P VAD+RNVVEGD SPDGKG L I+R Sbjct: 346 IVDRSVALMSDFAAGANIEDKHYFGVNWERDLPLPEVADLRNVVEGDPSPDGKGTLVIKR 405 Query: 61 GIEVGHVFQLGTAYSESMKATYLDEAGKPQPLQMGCYGIGVTRILGAAIEQNFDDKGIIW 120 GIEVGH+FQLGT YSE+MK + L E GKP L MGCYGIGV+R++ AAIEQN D++GI+W Sbjct: 406 GIEVGHIFQLGTKYSEAMKLSVLSEQGKPVNLIMGCYGIGVSRVVAAAIEQNHDERGILW 465 Query: 121 PATLAPFEVVLCPMGYDRSEAVKAEIDKLYDALVAAGVDVILDDRGER--PGAMFADWEL 178 P+ LAPF++ L P+ Y+ +E+VK DKLY L AAG +V+LDDR ++ PG FAD EL Sbjct: 466 PSALAPFQIALVPLKYE-TESVKQATDKLYAELTAAGFEVLLDDRDKKTSPGVKFADMEL 524 Query: 179 IGVPHRVVIGDRGLKDGQIEYQGRRDTAATPVPLVDALAFIKGKLA 224 IG+PHR+VI DRGL +G +EY+GRRD+ + +P+ + ++FI KL+ Sbjct: 525 IGIPHRIVISDRGLSEGVLEYKGRRDSESQNLPIGELMSFITEKLS 570 >PM1370 [J] COG0442 Prolyl-tRNA synthetase Pmu Pasteurella multocida Length = 571 Score = 275 bits (703), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 130/224 (58%), Positives = 163/224 (72%) Query: 1 VADRTVANMSDFVCGANEVDFHFTGANWDRDLPEPVVADIRNVVEGDASPDGKGVLAIQR 60 V DRTVANM +F GAN+ H+ G NW+RDLP P +AD+RNVVEGD SPDGKGVL I+R Sbjct: 347 VIDRTVANMDNFSAGANQDGKHYFGINWERDLPVPHIADLRNVVEGDPSPDGKGVLQIKR 406 Query: 61 GIEVGHVFQLGTAYSESMKATYLDEAGKPQPLQMGCYGIGVTRILGAAIEQNFDDKGIIW 120 GIEVGH+FQLGT YS +M AT E G+PQ + MGCYGIGVTR++ AAIEQ+ D++GIIW Sbjct: 407 GIEVGHIFQLGTKYSAAMNATVQGEDGRPQTMIMGCYGIGVTRVIAAAIEQHHDERGIIW 466 Query: 121 PATLAPFEVVLCPMGYDRSEAVKAEIDKLYDALVAAGVDVILDDRGERPGAMFADWELIG 180 P +APF+V + PM +SE+V+ ++LY L A GV+VI DDR ERPG MFAD ELIG Sbjct: 467 PDNIAPFKVAIVPMNMHKSESVQQFAEELYRTLTAQGVEVIFDDRKERPGVMFADMELIG 526 Query: 181 VPHRVVIGDRGLKDGQIEYQGRRDTAATPVPLVDALAFIKGKLA 224 VPH +VIG++ L+ G+IEY+ RR + L +K K A Sbjct: 527 VPHMIVIGEKNLEKGEIEYKYRRSGEKEMIAKDQLLDVLKAKFA 570 >YPO1068 [J] COG0442 Prolyl-tRNA synthetase Ype Yersinia pestis Length = 572 Score = 265 bits (677), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 126/203 (62%), Positives = 152/203 (74%) Query: 1 VADRTVANMSDFVCGANEVDFHFTGANWDRDLPEPVVADIRNVVEGDASPDGKGVLAIQR 60 +AD +VA MSDF GAN H+ G NW+RDL P+VAD+RNVVEGD SPDGKG L I+R Sbjct: 348 IADHSVAVMSDFGAGANIDGKHYFGINWERDLALPLVADLRNVVEGDISPDGKGTLQIKR 407 Query: 61 GIEVGHVFQLGTAYSESMKATYLDEAGKPQPLQMGCYGIGVTRILGAAIEQNFDDKGIIW 120 GIEVGH+FQLGT YSE MKAT E G+ Q + MGCYGIGV+R++ AAIEQN DD+GIIW Sbjct: 408 GIEVGHIFQLGTKYSEVMKATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNHDDRGIIW 467 Query: 121 PATLAPFEVVLCPMGYDRSEAVKAEIDKLYDALVAAGVDVILDDRGERPGAMFADWELIG 180 P +APF+V + PM +S VK ++LY L + G+DVILDDR ERPG MFAD ELIG Sbjct: 468 PDAIAPFQVAILPMNMHKSFRVKELAEELYTTLRSHGIDVILDDRKERPGVMFADMELIG 527 Query: 181 VPHRVVIGDRGLKDGQIEYQGRR 203 VPH +VIGDR L ++EY+ RR Sbjct: 528 VPHNIVIGDRNLDSEEVEYKNRR 550 >STM0242 [J] COG0442 Prolyl-tRNA synthetase Sty Salmonella typhimurium LT2 Length = 572 Score = 264 bits (675), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 124/203 (61%), Positives = 153/203 (75%) Query: 1 VADRTVANMSDFVCGANEVDFHFTGANWDRDLPEPVVADIRNVVEGDASPDGKGVLAIQR 60 + DRTVA MSDF GAN H+ G NWDRD+ PVVADIRNVV GD SPDG+G L I+R Sbjct: 348 IIDRTVAAMSDFAAGANIDGKHYFGINWDRDVATPVVADIRNVVAGDPSPDGQGTLLIKR 407 Query: 61 GIEVGHVFQLGTAYSESMKATYLDEAGKPQPLQMGCYGIGVTRILGAAIEQNFDDKGIIW 120 GIEVGH+FQLGT YSE++KA+ E G+ Q L MGCYGIGVTR++ AAIEQNFD++GI+W Sbjct: 408 GIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNFDERGIVW 467 Query: 121 PATLAPFEVVLCPMGYDRSEAVKAEIDKLYDALVAAGVDVILDDRGERPGAMFADWELIG 180 P +APF+V + PM +S V+ +KLY L A G++V++DDR ERPG MFAD ELIG Sbjct: 468 PDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIG 527 Query: 181 VPHRVVIGDRGLKDGQIEYQGRR 203 +PH +VIGDR L + IEY+ RR Sbjct: 528 IPHTIVIGDRNLDNDDIEYKYRR 550