BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0029.p         (197 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2817 [LR] COG0494 NTP pyrophosphohydrolases including oxidati...   288   5e-78
NMB1683 [LR] COG0494 NTP pyrophosphohydrolases including oxidati...   254   9e-68
NMA1942 [LR] COG0494 NTP pyrophosphohydrolases including oxidati...   254   1e-67
YPO0786 [LR] COG0494 NTP pyrophosphohydrolases including oxidati...   180   2e-45
ygdP [LR] COG0494 NTP pyrophosphohydrolases including oxidative ...   179   2e-45

>RSc2817 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes Rso Ralstonia solanacearum
          Length = 238

 Score =  288 bits (737), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 141/202 (69%), Positives = 157/202 (77%), Gaps = 6/202 (2%)

Query: 1   MLDREGFRPNVGIILLNAQNEVWWGKRVREHSWQFPQGGIKHGETPEQAMFRELEEEIGL 60
           MLDREGFRPNVGIIL+NA+NEV+WGKR+ EHSWQFPQGGIK+GETPEQAM+REL EE+GL
Sbjct: 1   MLDREGFRPNVGIILINARNEVFWGKRIGEHSWQFPQGGIKYGETPEQAMYRELHEEVGL 60

Query: 61  KAEHVKIIGRTRDWLRYEVPDHFIKREIRGHYRGQKQIWFLLRMVGRDCDVNLRLTSHPE 120
             EHV+I+GRTRDWLRYEVPD FI+REIRGHYRGQKQIWFLLRMVGRDCD+ LR T HPE
Sbjct: 61  LPEHVRIVGRTRDWLRYEVPDKFIRREIRGHYRGQKQIWFLLRMVGRDCDIQLRATEHPE 120

Query: 121 FDAWRWHDYWVPLDVVIEFKRDVYQQALKELSRFLARPHAAHRRPDAAGKT--EHASSDH 178
           FDAWRW  YWVPLD VIEFKR+VYQ AL ELSRF+ R H A   P   G    E    D+
Sbjct: 121 FDAWRWSQYWVPLDAVIEFKREVYQMALSELSRFVQRSHRAPLSPYGRGGPHRERDGRDN 180

Query: 179 PGNAQQA----DPCGSATPPTI 196
               Q      +  G   PPT+
Sbjct: 181 RAGGQAGRNDQNTRGQRQPPTL 202


>NMB1683 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes Nme Neisseria meningitidis MC58
          Length = 174

 Score =  254 bits (649), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 120/156 (76%), Positives = 138/156 (88%), Gaps = 1/156 (0%)

Query: 1   MLDREGFRPNVGIILLNAQNEVWWGKRVREHSWQFPQGGIKHGETPEQAMFRELEEEIGL 60
           MLDREG+RPNVGIIL+N +NEV+WGKRVREHSWQFPQGGIK GE+PE AM+REL EE+GL
Sbjct: 1   MLDREGYRPNVGIILINNRNEVFWGKRVREHSWQFPQGGIKPGESPETAMYRELYEEVGL 60

Query: 61  KAEHVKIIGRTRDWLRYEVPDHFIKREIRGHYRGQKQIWFLLRMVGRDCDVNLRLTSHPE 120
             +HVKIIGRTRDWLRY+VP+++++RE RG YRGQKQIW+LLR+ GRDCDVNLR T HPE
Sbjct: 61  LPQHVKIIGRTRDWLRYDVPNNWVRREWRGSYRGQKQIWYLLRLTGRDCDVNLRATRHPE 120

Query: 121 FDAWRWHDYWVPLDVVIEFKRDVYQQALKEL-SRFL 155
           FD WRWH YW P+D VI+FKRDVY  ALKEL SRFL
Sbjct: 121 FDGWRWHQYWAPVDEVIDFKRDVYLGALKELSSRFL 156


>NMA1942 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes NmA Neisseria meningitidis Z2491
          Length = 174

 Score =  254 bits (648), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/156 (76%), Positives = 138/156 (88%), Gaps = 1/156 (0%)

Query: 1   MLDREGFRPNVGIILLNAQNEVWWGKRVREHSWQFPQGGIKHGETPEQAMFRELEEEIGL 60
           MLDREG+RPNVGIIL+N +NEV+WGKRVREHSWQFPQGGIK GE+PE AM+REL EE+GL
Sbjct: 1   MLDREGYRPNVGIILINERNEVFWGKRVREHSWQFPQGGIKPGESPETAMYRELYEEVGL 60

Query: 61  KAEHVKIIGRTRDWLRYEVPDHFIKREIRGHYRGQKQIWFLLRMVGRDCDVNLRLTSHPE 120
             +HVKIIGRTRDWLRY+VP+++++RE RG YRGQKQIW+LLR+ GRDCDVNLR T HPE
Sbjct: 61  LPQHVKIIGRTRDWLRYDVPNNWVRREWRGSYRGQKQIWYLLRLTGRDCDVNLRATRHPE 120

Query: 121 FDAWRWHDYWVPLDVVIEFKRDVYQQALKEL-SRFL 155
           FD WRWH YW P+D VI+FKRDVY  ALKEL SRFL
Sbjct: 121 FDGWRWHQYWAPVDEVIDFKRDVYLGALKELSSRFL 156


>YPO0786 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes Ype Yersinia pestis
          Length = 175

 Score =  180 bits (456), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 78/152 (51%), Positives = 112/152 (73%)

Query: 1   MLDREGFRPNVGIILLNAQNEVWWGKRVREHSWQFPQGGIKHGETPEQAMFRELEEEIGL 60
           M+D +G+RPNVGI++ N Q EV W +R  +HSWQFPQGGI  GETPEQAM+REL EE+GL
Sbjct: 1   MIDDDGYRPNVGIVICNRQGEVLWARRYGQHSWQFPQGGINPGETPEQAMYRELFEEVGL 60

Query: 61  KAEHVKIIGRTRDWLRYEVPDHFIKREIRGHYRGQKQIWFLLRMVGRDCDVNLRLTSHPE 120
             + V+I+  TR+WLRY++P   ++ + +    GQKQ WFLL+++  + ++N++ +S PE
Sbjct: 61  NKKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQRWFLLQLMCNEAEINMQRSSTPE 120

Query: 121 FDAWRWHDYWVPLDVVIEFKRDVYQQALKELS 152
           FD WRW  YW P+  V+ FKRDVY++ +KE +
Sbjct: 121 FDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFA 152


>ygdP [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes Eco Escherichia coli K12
          Length = 176

 Score =  179 bits (455), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 115/169 (68%)

Query: 1   MLDREGFRPNVGIILLNAQNEVWWGKRVREHSWQFPQGGIKHGETPEQAMFRELEEEIGL 60
           M+D +G+RPNVGI++ N Q +V W +R  +HSWQFPQGGI  GE+ EQAM+REL EE+GL
Sbjct: 1   MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGL 60

Query: 61  KAEHVKIIGRTRDWLRYEVPDHFIKREIRGHYRGQKQIWFLLRMVGRDCDVNLRLTSHPE 120
             + V+I+  TR+WLRY++P   ++ + +    GQKQ WFLL++V  D ++N++ +S PE
Sbjct: 61  SRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPE 120

Query: 121 FDAWRWHDYWVPLDVVIEFKRDVYQQALKELSRFLARPHAAHRRPDAAG 169
           FD WRW  YW P+  V+ FKRDVY++ +KE +  +        +P  A 
Sbjct: 121 FDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMSLQENTPKPQNAS 169