BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0024.p         (87 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2821 [J] COG0211 Ribosomal protein L27 Rso Ralstonia solanace...   135   3e-32
VC0436 [J] COG0211 Ribosomal protein L27 Vch Vibrio cholerae          122   2e-28
BU388 [J] COG0211 Ribosomal protein L27 Buc Buchnera sp. APS          121   4e-28
YPO3511 [J] COG0211 Ribosomal protein L27 Ype Yersinia pestis         120   5e-28
PA4567 [J] COG0211 Ribosomal protein L27 Pae Pseudomonas aeruginosa   120   8e-28

>RSc2821 [J] COG0211 Ribosomal protein L27 Rso Ralstonia solanacearum
          Length = 86

 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/86 (77%), Positives = 74/86 (86%)

Query: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQAINAGGIIIRQRGTKVHPGENVGMGKDHTLF 60
          MA KKGGG+TRNGRDSESKRLGVKVYGGQAINAGGIIIRQRGT+ H G NVGMGKDHTLF
Sbjct: 1  MAQKKGGGSTRNGRDSESKRLGVKVYGGQAINAGGIIIRQRGTRTHAGVNVGMGKDHTLF 60

Query: 61 ALTEGKVQFVIKGVAKRQYVTVVAAA 86
          AL +G V+F  +G  K+Q+V VV AA
Sbjct: 61 ALVDGHVKFATRGEGKKQFVDVVPAA 86


>VC0436 [J] COG0211 Ribosomal protein L27 Vch Vibrio cholerae
          Length = 86

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 72/85 (84%)

Query: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQAINAGGIIIRQRGTKVHPGENVGMGKDHTLF 60
          MAHKK GG+TRNGRDSESKRLGVK +GG+++ AG II+RQRGTK H G NVG+GKDHTLF
Sbjct: 1  MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLF 60

Query: 61 ALTEGKVQFVIKGVAKRQYVTVVAA 85
          AL++GKV+F +KG   R++V++  A
Sbjct: 61 ALSDGKVKFEVKGPNNRKFVSIETA 85


>BU388 [J] COG0211 Ribosomal protein L27 Buc Buchnera sp. APS
          Length = 84

 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 70/83 (84%)

Query: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQAINAGGIIIRQRGTKVHPGENVGMGKDHTLF 60
          MAHKK GG+TRNGRDS ++RLGVK +GGQ I+AG II++QRGTK HPG+NVG GKDHT+F
Sbjct: 1  MAHKKAGGSTRNGRDSNAQRLGVKCFGGQLISAGSIIVKQRGTKFHPGKNVGCGKDHTIF 60

Query: 61 ALTEGKVQFVIKGVAKRQYVTVV 83
          A+ +GKV+F  KG+ KR Y+ ++
Sbjct: 61 AIVKGKVEFKKKGLKKRTYINII 83


>YPO3511 [J] COG0211 Ribosomal protein L27 Ype Yersinia pestis
          Length = 85

 Score =  120 bits (302), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 70/84 (83%)

Query: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQAINAGGIIIRQRGTKVHPGENVGMGKDHTLF 60
          MAHKK GG+TRNGRDSESKRLGVK +GG+A+ AG II+RQRGTK H G NVG GKDHTLF
Sbjct: 1  MAHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLF 60

Query: 61 ALTEGKVQFVIKGVAKRQYVTVVA 84
          AL +GKV+F +KG   R+++++ A
Sbjct: 61 ALADGKVKFEVKGPKNRKFISIEA 84


>PA4567 [J] COG0211 Ribosomal protein L27 Pae Pseudomonas aeruginosa
          Length = 85

 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 70/85 (82%)

Query: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQAINAGGIIIRQRGTKVHPGENVGMGKDHTLF 60
          MAHKK GG+TRNGRDSESKRLGVK++GGQA+ AG I++RQRGTK H G  VG+GKDHTLF
Sbjct: 1  MAHKKAGGSTRNGRDSESKRLGVKLFGGQAVKAGNILVRQRGTKFHAGYGVGLGKDHTLF 60

Query: 61 ALTEGKVQFVIKGVAKRQYVTVVAA 85
          A  +G V+F  KG   R+YV++VAA
Sbjct: 61 AKVDGVVKFETKGAFGRKYVSIVAA 85