BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0019.p         (230 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3340 [E] COG4177 ABC-type branched-chain amino acid transport...   173   3e-43
SMc03117 [E] COG4177 ABC-type branched-chain amino acid transpor...   164   1e-40
AGl1453 [E] COG4177 ABC-type branched-chain amino acid transport...   158   8e-39
BMEII0340 [E] COG4177 ABC-type branched-chain amino acid transpo...   147   2e-35
mll4887 Non COG                                                        76   6e-14

>RSc3340 [E] COG4177 ABC-type branched-chain amino acid transport system,
           permease component Rso Ralstonia solanacearum
          Length = 328

 Score =  173 bits (438), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/128 (71%), Positives = 104/128 (81%), Gaps = 1/128 (0%)

Query: 9   KKIAYGIFLLAALAAPF-GFYPVFLMKILCFALFASAFNLLIGYTGLLSFGHAAFFGWSG 67
           K I YG+ L A + AP  G YPVF+ K+LCFALFASAFNLL+GYTGLLSFGHAAFFG +G
Sbjct: 8   KFILYGLLLAALIVAPLAGAYPVFVAKLLCFALFASAFNLLLGYTGLLSFGHAAFFGGAG 67

Query: 68  YVAGHAIKVWGLPTEAGLVLGTVVGALVGLVMGLLAIRRQGIYFTMVTLALAQMLYFVCL 127
           YVAG+ ++   L  E GL+ GT  GAL+GLV+GLLAIRRQGIYF M+TLALAQM YF CL
Sbjct: 68  YVAGYLMRDLNLTPELGLIAGTAAGALIGLVVGLLAIRRQGIYFAMITLALAQMFYFFCL 127

Query: 128 QAPFTGGE 135
           QAPFTGGE
Sbjct: 128 QAPFTGGE 135


>SMc03117 [E] COG4177 ABC-type branched-chain amino acid transport system,
           permease component Sme Sinorhizobium meliloti
          Length = 330

 Score =  164 bits (415), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/147 (59%), Positives = 103/147 (70%)

Query: 9   KKIAYGIFLLAALAAPFGFYPVFLMKILCFALFASAFNLLIGYTGLLSFGHAAFFGWSGY 68
           + +  G+ L   L AP  FYPVFLMKILCFALFA AFNLL+GYTGLLSFGHAAFFG + Y
Sbjct: 19  QTVFLGVGLACLLLAPLFFYPVFLMKILCFALFACAFNLLLGYTGLLSFGHAAFFGGAAY 78

Query: 69  VAGHAIKVWGLPTEAGLVLGTVVGALVGLVMGLLAIRRQGIYFTMVTLALAQMLYFVCLQ 128
              HA+K WG+P E G++LG V  AL+G V+G  AIRRQGIYF M+TLALAQM YF CLQ
Sbjct: 79  FTAHAVKEWGVPPELGILLGVVGAALLGAVVGFFAIRRQGIYFAMITLALAQMFYFFCLQ 138

Query: 129 APFTGGEXAGEQAGRHRELAGVGHAYP 155
           A FT GE   +   R   L  +  + P
Sbjct: 139 AGFTRGEDGIQSVPRGHLLGFIDLSQP 165


>AGl1453 [E] COG4177 ABC-type branched-chain amino acid transport system,
           permease component Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 335

 Score =  158 bits (400), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 78/115 (67%), Positives = 92/115 (80%)

Query: 21  LAAPFGFYPVFLMKILCFALFASAFNLLIGYTGLLSFGHAAFFGWSGYVAGHAIKVWGLP 80
           +AAP   YP+FLMK+LCFALFA AFNLLIGYTGLLSFGHAAFFG + Y   +++K WG+ 
Sbjct: 38  IAAPMFVYPIFLMKLLCFALFACAFNLLIGYTGLLSFGHAAFFGGAAYFTAYSVKEWGVT 97

Query: 81  TEAGLVLGTVVGALVGLVMGLLAIRRQGIYFTMVTLALAQMLYFVCLQAPFTGGE 135
            E GL++G    AL+GLV+G  AIRRQGIYF M+TLAL+QM YF CLQAPFT GE
Sbjct: 98  PEIGLIIGMAGAALLGLVIGFFAIRRQGIYFAMITLALSQMFYFFCLQAPFTHGE 152


>BMEII0340 [E] COG4177 ABC-type branched-chain amino acid transport system,
           permease component Bme Brucella melitensis
          Length = 331

 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/127 (67%), Positives = 100/127 (78%)

Query: 9   KKIAYGIFLLAALAAPFGFYPVFLMKILCFALFASAFNLLIGYTGLLSFGHAAFFGWSGY 68
             I  GI L+  +AAPF  YP+FLMK+LCFALFASAFNLL+GYTG+LSFGHAAFFG + Y
Sbjct: 26  SAIVLGIALVGLIAAPFMVYPIFLMKMLCFALFASAFNLLLGYTGILSFGHAAFFGAAAY 85

Query: 69  VAGHAIKVWGLPTEAGLVLGTVVGALVGLVMGLLAIRRQGIYFTMVTLALAQMLYFVCLQ 128
           V  HA+K WG+  E GLVLG +  A +GLV+G LAIRRQGIY TM+TLALAQM +F CLQ
Sbjct: 86  VTAHAVKEWGVSPELGLVLGILAAAALGLVIGYLAIRRQGIYSTMITLALAQMFFFFCLQ 145

Query: 129 APFTGGE 135
           A FT GE
Sbjct: 146 ASFTHGE 152


>mll4887 Non COG
          Length = 320

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 5/112 (4%)

Query: 27  FYPVFLMKILCFALFASAFNLLIGYTGLLSFGHAAFFGWSGYVAGHAIKV--WGLPTEAG 84
           +Y   L +I+  A+FA  +N+L GY GLLS GHA FFG   Y AG AI    WG+P    
Sbjct: 30  YYHGLLARIMVLAVFAMGYNMLFGYVGLLSLGHAMFFGAGLYGAGLAIIQLGWGVPLA-- 87

Query: 85  LVLGTVVGALVGLVMGLLAIRRQGIYFTMVTLALAQMLYFVCLQ-APFTGGE 135
            + G   GA++ LV+GLLA+R  G+ F +VT+  AQ+ Y + L  A +TGG+
Sbjct: 88  FLGGIASGAVLALVIGLLALRATGVAFMIVTMMFAQVFYLLILYFAAWTGGD 139