BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0018.p         (53 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3341 [E] COG0559 Branched-chain amino acid ABC-type transport...    89   2e-18
BMEII0341 [E] COG0559 Branched-chain amino acid ABC-type transpo...    80   9e-16
AGl1455 [E] COG0559 Branched-chain amino acid ABC-type transport...    77   9e-15
SMc03118 [E] COG0559 Branched-chain amino acid ABC-type transpor...    76   2e-14

>RSc3341 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Rso Ralstonia solanacearum
          Length = 313

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/53 (81%), Positives = 51/53 (96%)

Query: 1   MGSILGSIVTGLGLGVIEGLTRVFYPEISATVVFIIMAIVLMIRPAGLFGKEK 53
           MGSILGSIVTGLGLGVIEGLT+V YP+ S+TVVF+IMA+VL++RPAGLFG+EK
Sbjct: 261 MGSILGSIVTGLGLGVIEGLTKVVYPQASSTVVFVIMALVLLVRPAGLFGREK 313


>BMEII0341 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Bme Brucella melitensis
          Length = 295

 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 47/53 (88%)

Query: 1   MGSILGSIVTGLGLGVIEGLTRVFYPEISATVVFIIMAIVLMIRPAGLFGKEK 53
           MGSILG+I+TG  LG+ EGLT+VFYPE S+ VVF+IMAIVL++RPAGLFGKE 
Sbjct: 243 MGSILGAIITGYVLGIAEGLTKVFYPEASSIVVFVIMAIVLLVRPAGLFGKEA 295


>AGl1455 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 295

 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 45/53 (84%)

Query: 1   MGSILGSIVTGLGLGVIEGLTRVFYPEISATVVFIIMAIVLMIRPAGLFGKEK 53
           MGSI+G+IVTG  LG+ EGLT+VFYPE S  V+F+IMA VL+IRPAGLFGK+ 
Sbjct: 243 MGSIMGAIVTGYMLGIAEGLTKVFYPEASNIVIFVIMAFVLLIRPAGLFGKDA 295


>SMc03118 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Sme Sinorhizobium meliloti
          Length = 295

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 46/53 (86%)

Query: 1   MGSILGSIVTGLGLGVIEGLTRVFYPEISATVVFIIMAIVLMIRPAGLFGKEK 53
           MGSI+G+IVTG  LG+ EGLT+VFYPE S  V+F+IMAIVL++RPAGLFG++ 
Sbjct: 243 MGSIMGAIVTGYLLGIAEGLTKVFYPEASNIVIFVIMAIVLLLRPAGLFGRDA 295