BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0016.p         (72 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3341 [E] COG0559 Branched-chain amino acid ABC-type transport...    84   1e-16
AGl1455 [E] COG0559 Branched-chain amino acid ABC-type transport...    68   4e-12
BMEII0341 [E] COG0559 Branched-chain amino acid ABC-type transpo...    65   4e-11

>RSc3341 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Rso Ralstonia solanacearum
          Length = 313

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/47 (87%), Positives = 44/47 (93%)

Query: 6   TLTEAFGINVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLI 52
            L EAFG+NVPLMVTLTYGFGVALAAFAGVLAAPVIQ+SPLMG N+I
Sbjct: 203 KLVEAFGVNVPLMVTLTYGFGVALAAFAGVLAAPVIQISPLMGQNMI 249


>AGl1455 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 295

 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 39/47 (82%)

Query: 6   TLTEAFGINVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLI 52
           TL +AFGINVP+++TLTY  G  LA F GVLAAP+ QVSPLMG+NLI
Sbjct: 185 TLVQAFGINVPVLLTLTYALGAGLAGFTGVLAAPIYQVSPLMGTNLI 231


>BMEII0341 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Bme Brucella melitensis
          Length = 295

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 37/45 (82%)

Query: 6   TLTEAFGINVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSN 50
           TL +AFGINVPL++T TY  G ALA  AG++AAP+ QVSPLMGSN
Sbjct: 185 TLVKAFGINVPLLLTFTYALGSALAGLAGIMAAPIYQVSPLMGSN 229