BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0011.p (221 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3343 [E] COG0410 ABC-type branched-chain amino acid transport... 303 2e-82 AGl1457 [E] COG0410 ABC-type branched-chain amino acid transport... 230 2e-60 SMc03119 [E] COG0410 ABC-type branched-chain amino acid transpor... 228 7e-60 BMEII0342 [E] COG0410 ABC-type branched-chain amino acid transpo... 219 3e-57 RSc1754 [E] COG0410 ABC-type branched-chain amino acid transport... 147 2e-35 >RSc3343 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 246 Score = 303 bits (775), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 151/244 (61%), Positives = 180/244 (73%), Gaps = 44/244 (18%) Query: 22 TPALEISDLQSWYGESHILHNVNLSVNKGEVVTLLGRNGAGRTTTLRSIMGLVGARKGSI 81 TPAL+I DL +WYGESHILH V+L+VN+GEVVTLLGRNGAGRTTTLR+IMGLVG RKGSI Sbjct: 3 TPALQIKDLHAWYGESHILHGVDLTVNRGEVVTLLGRNGAGRTTTLRAIMGLVGTRKGSI 62 Query: 82 RIN-----GNETVAMPTYKIAHQGVGYCPEERGIFSSLSAEENLMLPPFV-----SKTDK 131 ++ G ET+ +PT++IAH G+GYCPEERGIF+SLS EENL+LPP + ++ + Sbjct: 63 VVHDDAGQGVETIGLPTHRIAHCGIGYCPEERGIFASLSCEENLLLPPVLKGQVATRGNA 122 Query: 132 GMSIDEIYDMFPNLKERRNSQGTRLSG--------------------------------- 158 GMS+ EIY+MFPNLKERRNSQGTRLSG Sbjct: 123 GMSVAEIYEMFPNLKERRNSQGTRLSGGEQQMLAVGRILRTGANLLLLDEISEGLAPVIV 182 Query: 159 -ALARMILMLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSELESKTQKLNE 217 ALARMILMLK +GYT+VMVEQNFRFAAPLADRFYVMEHG+IVE F +++L+ K L+E Sbjct: 183 QALARMILMLKKRGYTVVMVEQNFRFAAPLADRFYVMEHGRIVERFEAAQLQDKMPILHE 242 Query: 218 LLGV 221 LLGV Sbjct: 243 LLGV 246 >AGl1457 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 233 Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 111/231 (48%), Positives = 157/231 (67%), Gaps = 36/231 (15%) Query: 25 LEISDLQSWYGESHILHNVNLSVNKGEVVTLLGRNGAGRTTTLRSIMGLVGARKGSIRIN 84 LE+S+L+SWYGES LH V+L+V +GE +T+LGRNG G+TTTLR+IMG++ RKG I++ Sbjct: 5 LEVSNLKSWYGESQALHGVDLTVGEGETITILGRNGVGKTTTLRTIMGIIRNRKGVIKLG 64 Query: 85 GNETVAMPTYKIAHQGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSIDEIYDMFPN 144 G + + +P ++ A G+G+ PEERGIF++LS EENLMLPP V+ GM++DEIY++FPN Sbjct: 65 GKDMMPVPLHRTAKYGIGFVPEERGIFATLSVEENLMLPPVVA--SGGMTLDEIYELFPN 122 Query: 145 LKERRNSQGTRLSGALARMILM----------------------------------LKAK 170 L ERR S GT+LSG +M+ M LK++ Sbjct: 123 LHERRTSPGTKLSGGEQQMLAMARILRTGVKVLLLDEPTEGLAPVIVQRIGEVLQKLKSR 182 Query: 171 GYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSELESKTQKLNELLGV 221 G T+V+VEQNFRFA+ +ADRFY+M+HGQ+V +F EL ++ +LN++LGV Sbjct: 183 GMTVVLVEQNFRFASRIADRFYLMDHGQMVSNFPVGELSARMGELNKVLGV 233 >SMc03119 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Sme Sinorhizobium meliloti Length = 233 Score = 228 bits (581), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 112/233 (48%), Positives = 161/233 (69%), Gaps = 36/233 (15%) Query: 23 PALEISDLQSWYGESHILHNVNLSVNKGEVVTLLGRNGAGRTTTLRSIMGLVGARKGSIR 82 P L+++ L +WYGESH+LH V+++V +GE+VTLLGRNG G+TTTLR+IMG+V R+G I Sbjct: 3 PLLKVAGLNAWYGESHVLHGVDMTVGEGEMVTLLGRNGVGKTTTLRAIMGIVRERRGEIS 62 Query: 83 INGNETVAMPTYKIAHQGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSIDEIYDMF 142 G + + +P +++AH+G+G+ PEERGIFS+L+ ENL+LPP V+K GM+IDEI+++F Sbjct: 63 FAGEDLMRVPLHRVAHRGLGFVPEERGIFSTLTVYENLLLPPAVAK--GGMTIDEIFELF 120 Query: 143 PNLKERRNSQGTRLSG------ALA-------RMILM---------------------LK 168 PNL ERRNS GT+LSG A+A RM+L+ LK Sbjct: 121 PNLHERRNSAGTKLSGGEQQMLAIARILRTGVRMMLLDEPTEGLAPVIVQRIGEVLKKLK 180 Query: 169 AKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSELESKTQKLNELLGV 221 +G T+++VEQNFRFA+ +ADRFY+M+HG++ F SEL + L+++LGV Sbjct: 181 ERGMTVLLVEQNFRFASKVADRFYLMDHGRVAGEFPVSELSGRMDMLHDVLGV 233 >BMEII0342 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Bme Brucella melitensis Length = 274 Score = 219 bits (558), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 107/236 (45%), Positives = 156/236 (66%), Gaps = 37/236 (15%) Query: 23 PALEISDLQSWYGESHILHNVNLSVNKGEVVTLLGRNGAGRTTTLRSIMGLVGARKGSIR 82 P L + L +WYGESH L V+L + GE +TLLGRNG G+TTTLR+IMG++ R G+I Sbjct: 39 PLLSVRGLYAWYGESHALQGVDLDIWPGETITLLGRNGVGKTTTLRAIMGIIRKRTGTIT 98 Query: 83 INGNETVAMPTYKIAHQGVGYCPEERGIFSSLSAEENLMLPPFVSK---TDKGMSIDEIY 139 ++G + + +P ++IA++G+G+ PEERGIF+SL+ ENL+LPP V+K + MS+DEIY Sbjct: 99 LDGKDIMRVPLHRIAYEGLGFVPEERGIFASLNVHENLLLPPVVAKGGGSQGAMSLDEIY 158 Query: 140 DMFPNLKERRNSQGTRLSG------ALARM----------------------------IL 165 ++FPNL ERRNS GT+LSG A+AR+ ++ Sbjct: 159 ELFPNLYERRNSPGTKLSGGEQQMLAIARILRTGVKVLLLDEPTEGLAPVIVQRIGDVLV 218 Query: 166 MLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSELESKTQKLNELLGV 221 LK +G T+++VEQNFRFAA +ADRFY+M+HG + ++F ++EL ++ L + LGV Sbjct: 219 ELKKRGMTVLLVEQNFRFAAKVADRFYLMDHGVVTDNFPTTELPARMAALTQALGV 274 >RSc1754 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 239 Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/239 (35%), Positives = 128/239 (53%), Gaps = 43/239 (17%) Query: 22 TPALEISDLQSWYGESHILHNVNLSVNKGEVVTLLGRNGAGRTTTLRSIMGLVGARKGSI 81 TP LE+ L ++YG+SHILH V+L V +GE+V LLGRNG GR+T +SIMG+V +G I Sbjct: 5 TPMLEVRGLHAYYGKSHILHGVDLHVGEGEIVALLGRNGVGRSTLAKSIMGMVRC-EGHI 63 Query: 82 RINGNETVAMPTYKIAHQGVGYCPEERGIFSSLSAEENLML-----PPFVSKTDKGMSID 136 + G + + T+++AH+G+GY PE R IF +L+ +NL+L P + D Sbjct: 64 LLRGKDVRGLRTFEVAHRGIGYVPENRDIFPTLTVRQNLLLGEKRNP---RQPRPRWQFD 120 Query: 137 EIYDMFPNLKERRNSQGTRLSGALARMILM------------------------------ 166 ++Y +FP LKER ++ LSG +M+ + Sbjct: 121 DMYRLFPRLKEREHTPAGVLSGGEQQMLTLCRTLMGDPDFVIIDEPTEGLAPLIVAQVGE 180 Query: 167 ----LKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSELESKTQKLNELLGV 221 LKA+G ++++VEQ A ++ R YVM HGQIV ++L++ + E L V Sbjct: 181 YLKTLKARGISVLLVEQKLAIALDISQRVYVMGHGQIVFEGTPADLKADARVRQEWLEV 239