BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0010.p         (92 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3344 [E] COG0411 ABC-type branched-chain amino acid transport...   151   3e-37
SMc03120 [E] COG0411 ABC-type branched-chain amino acid transpor...   103   1e-22
AGl1459 [E] COG0411 ABC-type branched-chain amino acid transport...   101   4e-22
BMEII0343 [E] COG0411 ABC-type branched-chain amino acid transpo...    98   4e-21
RSc1753 [E] COG0411 ABC-type branched-chain amino acid transport...    88   5e-18

>RSc3344 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Rso Ralstonia solanacearum
          Length = 256

 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/90 (78%), Positives = 80/90 (88%)

Query: 1   MEPELMLLDEPTQGMGHEDVDRVTALIKKVSVGRTILMVEHNMNVIAGICDRISVLQRGA 60
           MEPELMLLDEPTQGMGHEDVDRVT LI++V+ GRTILMVEHNMNV++ I D+I+VLQRG 
Sbjct: 166 MEPELMLLDEPTQGMGHEDVDRVTELIQRVAEGRTILMVEHNMNVVSSIADKITVLQRGQ 225

Query: 61  VLAEGTYDQVSKNPQVMEAYMGTTAGALEG 90
           +LAEG Y+ VSKNPQVMEAYMGT   ALEG
Sbjct: 226 ILAEGPYEDVSKNPQVMEAYMGTADAALEG 255


>SMc03120 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Sme Sinorhizobium meliloti
          Length = 262

 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 65/83 (78%)

Query: 1   MEPELMLLDEPTQGMGHEDVDRVTALIKKVSVGRTILMVEHNMNVIAGICDRISVLQRGA 60
           +EP+++LLDEP  GMGHEDV  V  +I++V+  R +LMVEHN++V+A +C  ++VLQRG 
Sbjct: 175 LEPKVLLLDEPMAGMGHEDVGMVAEIIREVARERAVLMVEHNLSVVATLCHHVTVLQRGE 234

Query: 61  VLAEGTYDQVSKNPQVMEAYMGT 83
           +LAEG Y  VS++P+V  AYMGT
Sbjct: 235 ILAEGDYATVSEDPRVRTAYMGT 257


>AGl1459 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 268

 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 62/83 (74%)

Query: 1   MEPELMLLDEPTQGMGHEDVDRVTALIKKVSVGRTILMVEHNMNVIAGICDRISVLQRGA 60
           ++P+++LLDEP  GMG EDV  V  LI++V+  R +LMVEHN+ V+A IC  ++VLQRG 
Sbjct: 183 LDPKVLLLDEPMAGMGGEDVSHVAELIREVAKTRAVLMVEHNLKVVADICHHVTVLQRGE 242

Query: 61  VLAEGTYDQVSKNPQVMEAYMGT 83
           +LAEG Y  VS +P+V  AYMGT
Sbjct: 243 ILAEGDYAAVSADPRVRTAYMGT 265


>BMEII0343 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Bme Brucella melitensis
          Length = 272

 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 60/83 (72%)

Query: 1   MEPELMLLDEPTQGMGHEDVDRVTALIKKVSVGRTILMVEHNMNVIAGICDRISVLQRGA 60
           ++P+++LLDEP  GMGHEDV  + ALI  V+  R +LMVEHN+ V+A I   ++VLQRG 
Sbjct: 187 LDPKVLLLDEPLAGMGHEDVHTIAALITDVAKDRAVLMVEHNLKVVADIAHHVTVLQRGE 246

Query: 61  VLAEGTYDQVSKNPQVMEAYMGT 83
           +LA G Y  VSK+ +V  AYMGT
Sbjct: 247 ILASGDYATVSKDERVRTAYMGT 269


>RSc1753 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Rso Ralstonia solanacearum
          Length = 266

 Score = 88.2 bits (217), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 63/89 (70%)

Query: 4   ELMLLDEPTQGMGHEDVDRVTALIKKVSVGRTILMVEHNMNVIAGICDRISVLQRGAVLA 63
           +++LLDEPT GM   + D    LI+KV+VG+T++MVEH+M+V+ G+ DRISVL  G V+A
Sbjct: 170 DVILLDEPTAGMSRSESDHAVDLIRKVTVGKTLVMVEHDMSVVFGLADRISVLVYGEVIA 229

Query: 64  EGTYDQVSKNPQVMEAYMGTTAGALEGAH 92
             T + +  N +V EAY+GTT  A + A+
Sbjct: 230 TDTPEAIRNNRRVKEAYLGTTLDANDAAN 258