BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0007.p (419 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport... 500 e-141 BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transpo... 445 e-124 AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport... 444 e-124 SMc03121 [E] COG0683 ABC-type branched-chain amino acid transpor... 433 e-121 RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport... 130 5e-30 >RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 402 Score = 500 bits (1287), Expect = e-141, Method: Compositional matrix adjust. Identities = 241/403 (59%), Positives = 312/403 (77%), Gaps = 3/403 (0%) Query: 16 LKLMSAAVCSALLYGSASAQPQGISDNVVRIGVLTDLSGTFSDFAGKGAVEAVKMAVEDF 75 LK ++ A+ +A L +AS +S + V+IG +TDLSG ++D G+G VEAVKMA+ED Sbjct: 3 LKKLAGALMAAGLGLAASGAHAQVSGDKVKIGYITDLSGLYADIDGQGGVEAVKMAIEDE 62 Query: 76 GGKVNGKPIEVISADHLNKADIAASTAREWIDQRKVDMITDISGSATALATIKVAAEKKR 135 GGKV GKPIE+++ADH NKADIAAS AREW+DQ+ +DM+ + SAT+LA KVAAEKKR Sbjct: 63 GGKVLGKPIELVTADHQNKADIAASKAREWMDQQGLDMLVGGTNSATSLAMSKVAAEKKR 122 Query: 136 IAIVTGGGTTRVTNEDCTPYSLHYNHDTAAMANVAGKYIVKQGGNTWYFLTADYSFGYSL 195 + I G GT R+TNE+CTPY++HY +DT A+A G +VKQGG +W+FLTADY+FG+SL Sbjct: 123 VFIGIGAGTARLTNEECTPYTIHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSL 182 Query: 196 QADTTAVVEANGGKIVGVVKHPFNTSDFSSYLVQAQSSGAKIIGLANAGADTINSIKTAA 255 + DT AVV+ANGG +VG VKHP + SDFSSYL+QAQ+S A+I+GLANAG DTINSIK A Sbjct: 183 ENDTAAVVKANGGTVVGSVKHPLSASDFSSYLLQAQASKAQILGLANAGGDTINSIKAAK 242 Query: 256 EFGMLNSGKQKFAGLLMFINDIHALGLKAAQGLYVTEAFYWDTNDETRKWSERFFKRVGK 315 EFG+ + K AGLLMFIND+H+LGL+ A+GL +T+++YWD ND TRK++ R+F ++ K Sbjct: 243 EFGITKT--MKIAGLLMFINDVHSLGLQTAEGLLMTDSWYWDMNDATRKFATRYFSKMKK 300 Query: 316 MPSSIQAADYSSTLQYLNAIKATGTDDADVVIKKMKETPVNDFYTKNGKIRADGLLVHDM 375 MPSS+QAADYS+ Y+ A+ A GTDD D VI ++K+T +NDF++K G IRADG VHDM Sbjct: 301 MPSSLQAADYSAVSNYIKAVAAAGTDDPDKVIAQLKKTQLNDFFSK-GTIRADGRYVHDM 359 Query: 376 YLMQVKTPAESKKPWDYYNIRAVVPGDEAYPSLASGTCNFAKK 418 YLMQVKTPAESKKPWDY I A +PGD+A+ + A C KK Sbjct: 360 YLMQVKTPAESKKPWDYMKIVATIPGDQAFTTPAESKCPLLKK 402 >BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 401 Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust. Identities = 202/380 (53%), Positives = 277/380 (72%), Gaps = 1/380 (0%) Query: 39 ISDNVVRIGVLTDLSGTFSDFAGKGAVEAVKMAVEDFGGKVNGKPIEVISADHLNKADIA 98 ISD V+IG+L D SG ++DF GK + EA KMA EDFGG V G PIE+I+ADH NK D+A Sbjct: 23 ISDGKVKIGILNDQSGVYADFGGKWSYEAAKMAAEDFGGTVLGAPIEIITADHQNKPDVA 82 Query: 99 ASTAREWIDQRKVDMITDISGSATALATIKVAAEKKRIAIVTGGGTTRVTNEDCTPYSLH 158 ++ AR+W D +VD I +++ S+ LA ++ EKK+I I TG T+ +T + CTPY H Sbjct: 83 SNIARQWYDTEQVDSIMELTTSSVGLAVQALSKEKKKITINTGAATSELTGKQCTPYGFH 142 Query: 159 YNHDTAAMANVAGKYIVKQGGNTWYFLTADYSFGYSLQADTTAVVEANGGKIVGVVKHPF 218 + +DT A+A G +V+QGG+TWYFLTADY+FGYSL+ TT VE+ GGK++G V+HP Sbjct: 143 WAYDTHALAVGTGGSLVQQGGDTWYFLTADYAFGYSLEEQTTKFVESKGGKVLGSVRHPL 202 Query: 219 NTSDFSSYLVQAQSSGAKIIGLANAGADTINSIKTAAEFGMLNSGKQKFAGLLMFINDIH 278 +T+D+SS+L+QAQ+SGAK++GLANAG DT N+IK AAEFG++ +G Q+ A LL + ++H Sbjct: 203 STTDYSSFLLQAQASGAKVVGLANAGLDTSNAIKQAAEFGIV-AGGQRLAALLFTLAEVH 261 Query: 279 ALGLKAAQGLYVTEAFYWDTNDETRKWSERFFKRVGKMPSSIQAADYSSTLQYLNAIKAT 338 LGL+AAQGL +TE FYWD +DE+R + +RFF R G+MP+ IQA YS+ LQYL AIK Sbjct: 262 GLGLEAAQGLTLTEGFYWDRDDESRAFGKRFFDRTGRMPNMIQAGTYSAVLQYLKAIKEA 321 Query: 339 GTDDADVVIKKMKETPVNDFYTKNGKIRADGLLVHDMYLMQVKTPAESKKPWDYYNIRAV 398 GTD+ + V KK+ E PV D + ++GK+ +G +++DMYLM+VK P ESK PWDYY + A Sbjct: 322 GTDETEAVAKKLHEMPVEDVFARHGKVGPNGRMIYDMYLMEVKKPEESKAPWDYYKVLAT 381 Query: 399 VPGDEAYPSLASGTCNFAKK 418 +PGD+AY C K+ Sbjct: 382 IPGDQAYMKPEESGCPLVKQ 401 >AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 402 Score = 444 bits (1143), Expect = e-124, Method: Compositional matrix adjust. Identities = 203/380 (53%), Positives = 280/380 (73%), Gaps = 1/380 (0%) Query: 39 ISDNVVRIGVLTDLSGTFSDFAGKGAVEAVKMAVEDFGGKVNGKPIEVISADHLNKADIA 98 ISD V+IG+L D SG +++F GK + EA KMAVEDFGGKV G P+EV++ADH NKAD+A Sbjct: 24 ISDGKVKIGILNDQSGVYANFGGKYSYEAAKMAVEDFGGKVLGAPVEVVTADHQNKADVA 83 Query: 99 ASTAREWIDQRKVDMITDISGSATALATIKVAAEKKRIAIVTGGGTTRVTNEDCTPYSLH 158 ++ AR+W D +VD I +++ S+ LA ++ +KK+I + TG TT +T + C+PY H Sbjct: 84 SNIARQWYDTEQVDSIMELTSSSVGLAVQALSKDKKKITVNTGAATTELTGKQCSPYGFH 143 Query: 159 YNHDTAAMANVAGKYIVKQGGNTWYFLTADYSFGYSLQADTTAVVEANGGKIVGVVKHPF 218 + +DT ++A G +VKQGG++W+FLTADY+FGYSL+ +T+ V+ANGGK++G V+HP Sbjct: 144 WAYDTYSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTSNFVKANGGKVLGSVRHPL 203 Query: 219 NTSDFSSYLVQAQSSGAKIIGLANAGADTINSIKTAAEFGMLNSGKQKFAGLLMFINDIH 278 T+D+SS+L+QAQSSGAK+IGLANAG DT N+IK A+EFG++ +G Q+ A LL + ++H Sbjct: 204 ATTDYSSFLLQAQSSGAKVIGLANAGLDTSNAIKQASEFGIV-AGGQRLAALLFTLAEVH 262 Query: 279 ALGLKAAQGLYVTEAFYWDTNDETRKWSERFFKRVGKMPSSIQAADYSSTLQYLNAIKAT 338 LGL+AAQGL +TE FYWD +DE+RK+ ERF +R G MP+ I YS+ L YL AI+ Sbjct: 263 GLGLEAAQGLTLTEGFYWDRDDESRKFGERFKERTGAMPNMIHTGTYSAVLHYLKAIEKA 322 Query: 339 GTDDADVVIKKMKETPVNDFYTKNGKIRADGLLVHDMYLMQVKTPAESKKPWDYYNIRAV 398 GTDDAD V K MKE PVND + K+G + A+G ++HDMYLM+VK P ESK+PWDYY + A Sbjct: 323 GTDDADAVAKAMKEMPVNDVFAKDGHVAANGRMIHDMYLMEVKKPDESKQPWDYYKVLAT 382 Query: 399 VPGDEAYPSLASGTCNFAKK 418 +PG EA+ C K+ Sbjct: 383 IPGKEAFMDPTKSGCPLVKQ 402 >SMc03121 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 401 Score = 433 bits (1113), Expect = e-121, Method: Compositional matrix adjust. Identities = 202/396 (51%), Positives = 281/396 (70%), Gaps = 2/396 (0%) Query: 22 AVCSALLYGSASAQPQGISDNVVRIGVLTDLSGTFSDFAGKGAVEAVKMAVEDFGGKVNG 81 A + +L GS +A SD V+IG+L D SG ++DF GK + EA MAVEDFGGKV G Sbjct: 7 ATLAMVLAGSTAALADA-SDGKVKIGILNDQSGVYADFGGKSSYEAALMAVEDFGGKVLG 65 Query: 82 KPIEVISADHLNKADIAASTAREWIDQRKVDMITDISGSATALATIKVAAEKKRIAIVTG 141 P+EV++ADH NK DIA++ AR+W D +VD I +++ S+ ALA ++ EKK+I IVTG Sbjct: 66 VPVEVVTADHQNKPDIASNIARQWYDTEQVDSIMELTTSSVALAVQAISKEKKKIDIVTG 125 Query: 142 GGTTRVTNEDCTPYSLHYNHDTAAMANVAGKYIVKQGGNTWYFLTADYSFGYSLQADTTA 201 TT +T + C+PY H+ +DT ++A G +VKQGG++W+FLTADY+FGYSL+ +T Sbjct: 126 AATTELTGKQCSPYGFHWAYDTHSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTGN 185 Query: 202 VVEANGGKIVGVVKHPFNTSDFSSYLVQAQSSGAKIIGLANAGADTINSIKTAAEFGMLN 261 V+ NGG +VG V+HP T+DFSS+L+QAQSSGAK+IGLANAG DT N+IK AAEFG++ Sbjct: 186 YVKENGGTVVGAVRHPLATTDFSSFLLQAQSSGAKVIGLANAGLDTSNAIKQAAEFGIVQ 245 Query: 262 SGKQKFAGLLMFINDIHALGLKAAQGLYVTEAFYWDTNDETRKWSERFFKRVGKMPSSIQ 321 G Q+ A LL + ++H LGL AAQGL +TE FYW+ ++E+ K+ +RF +R GKMP+ + Sbjct: 246 GG-QRLAALLFTLAEVHGLGLDAAQGLTLTEGFYWNRDEESAKFGKRFMERTGKMPNMVH 304 Query: 322 AADYSSTLQYLNAIKATGTDDADVVIKKMKETPVNDFYTKNGKIRADGLLVHDMYLMQVK 381 A YS+ LQYL AI+ GTD+ + V K++ PV+D + KNG + +G ++HDMYL++VK Sbjct: 305 AGTYSAVLQYLKAIEKAGTDETEAVAKELHALPVDDVFAKNGTVAPNGRMIHDMYLLEVK 364 Query: 382 TPAESKKPWDYYNIRAVVPGDEAYPSLASGTCNFAK 417 P ESK+PWDY+ + A +PG EA+ A C K Sbjct: 365 KPDESKEPWDYFKVLATIPGKEAFIDPAQSGCELVK 400 >RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 391 Score = 130 bits (328), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 137/256 (53%), Gaps = 8/256 (3%) Query: 44 VRIGVLTDLSGTFSDFAGKGAVEAVKMAVEDFG--GKVNGKPIEVISADHLNKADIAAST 101 +RIG++ ++G ++ A + V ++AV G + G+PIE++ D N Sbjct: 40 LRIGMVDPMTGVYAAVA-QNEVTGARLAVAQINARGGILGRPIELLVEDSANDVGTGVQK 98 Query: 102 AREWIDQRKVDMITDISGSATALATIKVAAEKKRIAIVTGGGTTRVTNEDCTPYSLHYNH 161 AR+ I++ +V + S A A +V+ EKK + IV+GG T +T DC + Sbjct: 99 ARKLIERDQVSFLIGDVNSGIAQAIAQVSNEKKVLHIVSGGHTDTITGSDCKWNVYRVCN 158 Query: 162 DTAAMANVAGKYIVKQGGNTWYFLTADYSFGYSLQADTTAVVEANGGKIVGVVKHPFNTS 221 T+ AN + + G W+F+T DY+FG++LQ A ++ GG I G P T+ Sbjct: 159 TTSMEANAVANLLFSKYGKKWHFITPDYAFGHTLQKAAAADLQKLGGTITGNELTPLGTT 218 Query: 222 DFSSYLVQAQSSGAKIIGLANAGADTINSIKTAAEFGMLNSGKQ-KFAGLLMFINDIHAL 280 DFS+YL++A+++ ++ + G+D +N +K A+FG+ GKQ AGL + + A+ Sbjct: 219 DFSAYLIKARAANPDVLLVLPQGSDMVNCLKQIAQFGI---GKQMHIAGLQQELESLEAM 275 Query: 281 GLKAAQGLYVTEAFYW 296 +A G+++ E +YW Sbjct: 276 PPEARVGIWMFE-WYW 290