BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0086.p         (608 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3339_1 [R] COG1752 Predicted esterase of the alpha-beta hydrol...   150   1e-35
VC0603_1 [R] COG1752 Predicted esterase of the alpha-beta hydrol...   137   8e-32
PA3339_2 [M] COG0729 Outer membrane protein Pae Pseudomonas aeru...   122   3e-27
BS_ylbK [R] COG1752 Predicted esterase of the alpha-beta hydrola...    99   4e-20
VC0603_2 [M] COG0729 Outer membrane protein Vch Vibrio cholerae        98   6e-20

>PA3339_1 [R] COG1752 Predicted esterase of the alpha-beta hydrolase
           superfamily Pae Pseudomonas aeruginosa
          Length = 308

 Score =  150 bits (378), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/177 (46%), Positives = 116/177 (65%)

Query: 1   VQGNNLLTLLQNWTAQLPANISFDQLPIPFRAVATDLGKGTEVILERGSLPRAMRASMAV 60
           +QG NL  +L++       N  FD+L IPFRAV+TD+  G +V+  +G LP+A+RASM++
Sbjct: 132 IQGQNLAMVLESLLVHTSDNRDFDKLAIPFRAVSTDIATGEKVVFRKGHLPQAIRASMSI 191

Query: 61  PGLFAPYPIDGRTLVDGGLVSNLPVQEARDMGADVIIAVNIATPLQDPANLQSPTAVAQQ 120
           P +FAP  IDGR LVDGG+V N+PV  ARDMG DV+I V+I  PL+D  +L +   V  Q
Sbjct: 192 PAVFAPVEIDGRLLVDGGMVDNIPVDVARDMGVDVVIVVDIGNPLRDRKDLSTVLDVMNQ 251

Query: 121 MVGILIQQNVKAQKALLGKNDVLIEPELSGMSFTDFARGKDGVNAGWNAAQAQSARL 177
            + ++ ++N +AQ A L   DVLI+P LSG   TDF R    ++AG+ A    +ARL
Sbjct: 252 SITLMTRKNSEAQLATLKPGDVLIQPPLSGYGTTDFGRVPQLIDAGYRATTVLAARL 308


>VC0603_1 [R] COG1752 Predicted esterase of the alpha-beta hydrolase
           superfamily Vch Vibrio cholerae
          Length = 310

 Score =  137 bits (345), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 105/170 (61%)

Query: 1   VQGNNLLTLLQNWTAQLPANISFDQLPIPFRAVATDLGKGTEVILERGSLPRAMRASMAV 60
           VQG N+L +L+  T  LPA  SFDQL IP+RAVATD+    EV+L++G L  AM ASM+V
Sbjct: 141 VQGQNMLRMLRETTGNLPAFDSFDQLVIPYRAVATDIIHLQEVVLDKGFLVDAMMASMSV 200

Query: 61  PGLFAPYPIDGRTLVDGGLVSNLPVQEARDMGADVIIAVNIATPLQDPANLQSPTAVAQQ 120
           PG   PY IDG  LVDGG+ +N+PV+ AR MGAD+IIAV+I+T  +   +  +   VA Q
Sbjct: 201 PGALPPYEIDGLWLVDGGVTNNMPVEVARAMGADIIIAVDISTDYKSQEDFTNLFTVADQ 260

Query: 121 MVGILIQQNVKAQKALLGKNDVLIEPELSGMSFTDFARGKDGVNAGWNAA 170
           +   L++++ + Q   L   D+L+ P +  M   +F +       G+  A
Sbjct: 261 LSNYLVRRSTERQSDHLTSRDLLLRPPVGKMETMEFDKMPAAFAMGYQEA 310


>PA3339_2 [M] COG0729 Outer membrane protein Pae Pseudomonas aeruginosa
          Length = 420

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 185/413 (44%), Gaps = 29/413 (7%)

Query: 206 VDAIEIKTTGRIPAAYVRSRLSVKEGDVYDADKINQQLSQLATNGDFNALTQEIVEKDGR 265
           +DAI ++   ++    +R  +    G   D  ++   +S L     F+ +   +V++   
Sbjct: 27  IDAIRVENNSKVSDEVIRHYIRQPLGTRLDLGRLQDDMSTLYGLDYFDQVQYRVVKEKKL 86

Query: 266 NVLLIDAEEKSWGPQYLLFGLGLSNNFNGRGGVNLQIGHRYPWIDQSGLEWRNDLVLGNN 325
           N L+I A  K  G  +L  GL LS++  G    NL   +R   +++ G EW   + LG +
Sbjct: 87  NTLVIHATGKKGGTDFLRLGLNLSDDMRGESTFNLGGSYRMNGLNRLGAEWLTRVQLG-D 145

Query: 326 RASLHSELRQPVFGTSGIYLSPYVDLSRRYVDIYLDGSDAKASPATQYRIDTYTAGVDLG 385
           R  L+SE  QP+   S  +++P++    + VD+  D       P  +YR++ Y  G+++G
Sbjct: 146 RQELYSEFYQPLDVGSRYFVAPFLFHEAQNVDVTEDN-----DPLLRYRLERYGYGLNVG 200

Query: 386 MPLARLGEVRLGVNYQHNKYTPSYNLSDPAFGSLYDAAQSNQPVARARLTIDQLDDPLFP 445
             +A  GE+RLG    + K      + DP+   +       +     + + D +DD  FP
Sbjct: 201 RQIANNGEIRLGAVQAYGK--ADVRIGDPSLPDI----DFTEGYYELKYSFDTVDDVNFP 254

Query: 446 RKGYYLFAEAHRGFGK---QEDRYSDAQFKSLWAFSHDRNT------VNVALEAASNLSS 496
            +G  +     R + K    +D Y     +   A S   +T          L+ A  ++S
Sbjct: 255 HEGEEI-GLTMRRYDKSLGSDDSYRQWDLRLNKALSFGADTWVFGGGYGRTLDDAEVVTS 313

Query: 497 NSAGPGFFLGGFQRLSAYAADQFYGNYLLYSRLTYLRDLNDFAVPGLRNPV-LGTSLEAG 555
           +     F LGG + LS +  D   G      R+ Y R L + +   L  P+ LG S+E G
Sbjct: 314 S-----FTLGGARELSGFRRDALSGQNYSLGRIVYYRRLTERSFLPLDFPLYLGGSIERG 368

Query: 556 NVWQSRSAMGDGPYRKSVSLFLGGSSPVGPLYFGAALGDQGVWNVYLQLGRVF 608
            +W + +   D  Y  + SL +G  +P+GPL F   + D+     YL LG+ F
Sbjct: 369 RIWNNDNEY-DSGYINAASLMIGFDTPLGPLTFSYGINDENFKAFYLNLGQNF 420


>BS_ylbK [R] COG1752 Predicted esterase of the alpha-beta hydrolase
           superfamily Bsu Bacillus subtilis
          Length = 260

 Score = 98.6 bits (244), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 8/177 (4%)

Query: 1   VQGNNLLTLLQNWTAQLPANISFDQLPIPFRAVATDLGKGTEVILERGSLPRAMRASMAV 60
           ++G+ +  L+  +T   P     ++L IP   VA DL  G +++  +GS+  A+RAS+++
Sbjct: 82  LKGDRVRQLVHAYTFGKP----IEELQIPLGIVACDLQTGEKIVFRKGSVSDAVRASISI 137

Query: 61  PGLFAPYPIDGRTLVDGGLVSNLPVQEARDMGADVIIAVNIATPLQDPANLQSPTAVAQQ 120
           PG+F P  +DGR LVDG +V  +PV   +DMGAD+IIA +++   +    +     + Q 
Sbjct: 138 PGIFIPQRLDGRLLVDGAVVDRIPVSVVKDMGADIIIASDVSRVRKTETAVHIFDVIMQS 197

Query: 121 MVGILIQQNVKAQKALLGKNDVLIEPELSGMSFTDFARGKDGVNAGWNAAQAQSARL 177
           M  IL  + V+ Q       D++I P L   S + FA  ++ ++AG  A     +++
Sbjct: 198 M-DILQNELVRHQTI---AADIMIRPSLETYSSSSFANIEEMISAGEEATNRMISKI 250


>VC0603_2 [M] COG0729 Outer membrane protein Vch Vibrio cholerae
          Length = 454

 Score = 97.8 bits (242), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 192/459 (41%), Gaps = 35/459 (7%)

Query: 175 ARLTELSLSPTEWQAYL---AARRTGVVLAHDTRVDAIEIKTTGRIPAAYVRSRLSVKEG 231
           A    ++LS  ++Q Y+     RR  +    + +VD I ++         + +RL+++  
Sbjct: 5   AFFKNIALSSAQYQVYVDEKEERRKTLRYGDNVQVDEIVLQNNTHYSDLLLLNRLNLEPA 64

Query: 232 DVYDADKINQQLSQLATNGDFNALTQEIVEKDGRNVLLIDAEEKSWGPQYLLFGLGLSNN 291
                ++I   +  L     F  +  +  ++D +  L++D  EKSWGP Y+ F   L ++
Sbjct: 65  QKLSTEEIEASIEDLYALDRFELVRYQYEQRDDQQQLVVDVREKSWGPNYVNFRFFLEDD 124

Query: 292 FNGRGGVNLQIGHRYPWIDQSGLEWRNDLVLGNNRASLHSELRQPVFGTSGIYLSPYVDL 351
           F+      L +   +  I+  G E   ++ +G ++  + +EL  P+      + +  +  
Sbjct: 125 FDTESQYALGVSTNFTDINSHGAELALNMDMGTDKL-IEAELYSPLLSGQKTFTTALLHF 183

Query: 352 SRRYVDIYLDGSDAKASPATQ-YRIDTYT---AGVDLGMPLARLGEVRLGVNYQHNKYTP 407
           S    +  L G D  +  AT+ Y   TY+   A + LG  +    E++LG  Y       
Sbjct: 184 SNERRNAPLAGFDDTSLAATENYLPVTYSEWVAELALGYQIELWREMKLGARYSKGNGEA 243

Query: 408 SYNLSDPAFGSLYDAAQSNQPVARARLTIDQLDDPLFPRKGYYLFAE------------A 455
           S   S P FG    + Q        R   D LDD   P++G Y   E             
Sbjct: 244 S---SLPVFGDF--SFQRRGVFFDYRH--DTLDDFSLPQQGIYFDLEYLISKDSFDGSNP 296

Query: 456 HRGFGKQEDRYSDAQFKSLWAFSHDRNTVNVALEAASNLSSNSAGP--GFFLGGFQRLSA 513
             G     D  S+   + + A +  R+T+   L+     S +S+ P     +GGF  LS 
Sbjct: 297 LSGDALSSDTVSELSGRLIAAHTFSRHTLVANLDMGVVKSKHSSTPIDPKSIGGFLNLSG 356

Query: 514 YAADQFYGNYLLYSRLTYLRDL--NDFAVPGLRNPV-LGTSLEAGNVWQSRSA-MGDGPY 569
              +   G   LY  L Y      NDF +    +PV LG S+E G VW      + D P 
Sbjct: 357 IPRNSLIGQNKLYGNLVYRYRWFDNDFGM--FTSPVYLGASIEYGGVWSDPDLRLQDAPL 414

Query: 570 RKSVSLFLGGSSPVGPLYFGAALGDQGVWNVYLQLGRVF 608
             + S+F G +SP+GP+ FG    +Q   ++Y  +G  F
Sbjct: 415 YGAGSIFAGVNSPIGPIMFGYGRTEQNYDSIYFIIGTTF 453