BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0073.p         (158 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC1641 Non COG                                                         93   3e-19
RSc1443 [J] COG1514 2'-5' RNA ligase Rso Ralstonia solanacearum        74   2e-13

>CC1641 Non COG
          Length = 192

 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 84/155 (54%), Gaps = 5/155 (3%)

Query: 7   AEKLLALHGVTGKRVGPERLHITLELVGHDS--DERVVEAACRAADAVRFAAIDARFDAA 64
           A +L    G+ G  +   RLHITL  +G  +     +V     A DAV   A +  FD A
Sbjct: 39  AARLKRASGLAGPLLQTGRLHITLHHLGDYAGLPNDIVSKGRFAGDAVEAGAFEVVFDRA 98

Query: 65  MTFSAPSG--PFVLLGGKGLDGVRELRTALGCAMAEHGFTPQRSYEPHMTLGYDPRHRVE 122
            +F+  SG  PF L GG+G+  +   + ALG  MA     P RS+ PH+TL YD R  + 
Sbjct: 99  ASFANRSGNNPFTLQGGEGIQPLIAFQKALGEKMAGAALRPDRSFTPHITLLYD-RQVMP 157

Query: 123 RIAIDPIGFRIAEFALVKSHIGLSRHEVLRVWPLG 157
             AI PI + ++ FALV+S +G ++H VLR W LG
Sbjct: 158 EQAITPISWTVSRFALVQSKLGRTQHIVLREWDLG 192


>RSc1443 [J] COG1514 2'-5' RNA ligase Rso Ralstonia solanacearum
          Length = 198

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 6/138 (4%)

Query: 24  ERLHITLELVGH--DSDERVVEAACRAADAVRFAAIDARFDAAMTFSAPSG--PFVLLGG 79
           ERLH+TL  +G   +  + +V  AC AA  V     +  FD  ++F       PFVL GG
Sbjct: 55  ERLHVTLHHLGDFVELPDTLVARACEAAAGVALPPFEVIFDQVVSFHGRRDHRPFVLTGG 114

Query: 80  KGLDGVRELRTALGCAMAEHGF-TPQRSYEPHMTLGYDPRHRVERIAIDPIGFRIAEFAL 138
            GL  + + + ALG A+   G   PQ  + PH+TL YD R       I+PI + + EF L
Sbjct: 115 VGLHALIDFQHALGAALERAGLRVPQARFVPHVTLLYD-RGGFAPKPIEPIAWTVREFVL 173

Query: 139 VKSHIGLSRHEVLRVWPL 156
           + S +G +R++    WPL
Sbjct: 174 IDSWLGRTRYDEKGRWPL 191