BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0060.p (229 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1455 [TK] COG0745 Response regulators consisting of a CheY-li... 266 3e-71 NMB0595 [TK] COG0745 Response regulators consisting of a CheY-li... 252 4e-67 NMA0798 [TK] COG0745 Response regulators consisting of a CheY-li... 252 4e-67 YPO2998 [TK] COG0745 Response regulators consisting of a CheY-li... 236 4e-62 VC2692 [TK] COG0745 Response regulators consisting of a CheY-lik... 201 1e-51 >RSp1455 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 246 Score = 266 bits (680), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 136/229 (59%), Positives = 170/229 (74%), Gaps = 1/229 (0%) Query: 1 MSKVLLIDDDIELVDMLKEYLEQEKFEVRVAYDGESGVVEALSGQYAIVVLDVMMPRLNG 60 M++VLL+DDD EL ML +YL E F VA+DGE+GV ALSG +AIVVLDVMMPRL+G Sbjct: 19 MTRVLLVDDDAELTGMLVQYLAHEGFAAEVAHDGEAGVARALSGDFAIVVLDVMMPRLSG 78 Query: 61 LETLRRIRAKSNLPVLMLTAKGDDTDRIIGLELGADDYVPKPCTPRELTARVRAILRRTV 120 ++ LRRIRA S +PV+MLTA+GD+ DRI GL+LGADDYVPKPCTP EL AR+RAILRRT Sbjct: 79 IDALRRIRAASQVPVVMLTARGDNIDRISGLDLGADDYVPKPCTPGELVARLRAILRRTS 138 Query: 121 IDNPDHSPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 + + + G L++WP RRATW G LELT +EF+LLEVLAR+AG+ VSK+ +S Sbjct: 139 GAD-AGAAAGAIHAGPLALWPASRRATWLGSALELTGTEFSLLEVLARHAGRLVSKEDIS 197 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIATLGSDKSCIQTVYRLGYQFIKE 229 Q RPLARFDR IDVH+SSIRQK+ + I +V +GYQ + + Sbjct: 198 LQAFDRPLARFDRRIDVHISSIRQKLGQRPDGQPWIVSVRGMGYQLLAD 246 >NMB0595 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Nme Neisseria meningitidis MC58 Length = 225 Score = 252 bits (644), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 132/229 (57%), Positives = 170/229 (74%), Gaps = 4/229 (1%) Query: 1 MSKVLLIDDDIELVDMLKEYLEQEKFEVRVAYDGESGVVEALSGQYAIVVLDVMMPRLNG 60 MS+VLL+DDD L ++L EYL E VR DGE+GV E LSGQY +VVLD MMP++NG Sbjct: 1 MSRVLLVDDDALLTELLTEYLSAEGLNVRSVPDGEAGVQEILSGQYDVVVLDSMMPKMNG 60 Query: 61 LETLRRIRAKSNLPVLMLTAKGDDTDRIIGLELGADDYVPKPCTPRELTARVRAILRRTV 120 L+ L+ +RA+S +P++MLTAKGDD DRIIGLE+GADDYVPKPCTPREL AR+ AILRR Sbjct: 61 LDVLKNVRARSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQ 120 Query: 121 IDNPDHSPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 ++ + ++V + ++P +R+A+ PLELTS+EFNLLEVL R+AG+ VSK+ LS Sbjct: 121 HSGEQNNAPNSISVSDVVLYPAKRQASVKDMPLELTSTEFNLLEVLMRHAGQVVSKETLS 180 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIATLGSDKSCIQTVYRLGYQFIKE 229 + L R LA+FDR+IDVH+SSIR K+ D S IQTV LGY F+K Sbjct: 181 VEALDRKLAKFDRSIDVHISSIRHKLG----DASLIQTVRGLGYLFVKN 225 >NMA0798 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain NmA Neisseria meningitidis Z2491 Length = 225 Score = 252 bits (644), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 132/229 (57%), Positives = 170/229 (74%), Gaps = 4/229 (1%) Query: 1 MSKVLLIDDDIELVDMLKEYLEQEKFEVRVAYDGESGVVEALSGQYAIVVLDVMMPRLNG 60 MS+VLL+DDD L ++L EYL E VR DGE+GV E LSGQY +VVLD MMP++NG Sbjct: 1 MSRVLLVDDDALLTELLTEYLSAEGLNVRSVPDGEAGVQEILSGQYDVVVLDSMMPKMNG 60 Query: 61 LETLRRIRAKSNLPVLMLTAKGDDTDRIIGLELGADDYVPKPCTPRELTARVRAILRRTV 120 L+ L+ +RA+S +P++MLTAKGDD DRIIGLE+GADDYVPKPCTPREL AR+ AILRR Sbjct: 61 LDVLKNVRARSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQ 120 Query: 121 IDNPDHSPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 ++ + ++V + ++P +R+A+ PLELTS+EFNLLEVL R+AG+ VSK+ LS Sbjct: 121 HSGEQNNAPNSISVSDVVLYPAKRQASVKDMPLELTSTEFNLLEVLMRHAGQVVSKETLS 180 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIATLGSDKSCIQTVYRLGYQFIKE 229 + L R LA+FDR+IDVH+SSIR K+ D S IQTV LGY F+K Sbjct: 181 VEALDRKLAKFDRSIDVHISSIRHKLG----DASLIQTVRGLGYLFVKN 225 >YPO2998 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ype Yersinia pestis Length = 227 Score = 236 bits (601), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 114/226 (50%), Positives = 163/226 (72%), Gaps = 3/226 (1%) Query: 3 KVLLIDDDIELVDMLKEYLEQEKFEVRVAYDGESGVVEALSGQYAIVVLDVMMPRLNGLE 62 K+LL+DDD+EL MLKEYL E F + G++G+ ALSG Y ++LD+M+P ++G++ Sbjct: 2 KILLVDDDLELGTMLKEYLGGEGFTAKHVLTGKAGIDGALSGDYTALILDIMLPDMSGID 61 Query: 63 TLRRIRAKSNLPVLMLTAKGDDTDRIIGLELGADDYVPKPCTPRELTARVRAILRRTVID 122 LR++R KS LP++MLTAKGD+ DR+IGLE+GADDY+PKPC PREL AR+RA+LRR + Sbjct: 62 VLRQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRR-FEE 120 Query: 123 NPDHSPYSP--LAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 P S + G L++ P R + W G+P +LT+SEFNLLE+L R+ + V+K LS Sbjct: 121 QPTLSSIDSGIITQGGLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPERVVTKDELS 180 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIATLGSDKSCIQTVYRLGYQF 226 ++GLGRP +DR++DVH+S+IRQK+A L + I+TV +GY+ Sbjct: 181 DKGLGRPREAYDRSVDVHISNIRQKLAALPGNHLNIETVRSIGYRI 226 >VC2692 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Vch Vibrio cholerae Length = 228 Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 109/230 (47%), Positives = 159/230 (69%), Gaps = 4/230 (1%) Query: 1 MSKVLLIDDDIELVDMLKEYLEQEKFEVRVAYDGESGVVEALSGQYAIVVLDVMMPRLNG 60 M+ +LLIDDD EL +L E L+ E FE+ A DGE+G+ A+S + +++LDVMMP+LNG Sbjct: 1 MAHILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLA-AVSDEIDLILLDVMMPKLNG 59 Query: 61 LETLRRIRAKSNLPVLMLTAKGDDTDRIIGLELGADDYVPKPCTPRELTARVRAILRRTV 120 +ETL+R+R K PVLMLTAKG++ DR+IGLELGADDY+PKP + REL AR+RAILRRT Sbjct: 60 METLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQ 119 Query: 121 ID-NPDHSPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQHL 179 P +S + + ++P ++ A G+ LELT++EF LL ++ G ++K+ L Sbjct: 120 NGLTPKNSDV--IECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEML 177 Query: 180 SEQGLGRPLARFDRNIDVHLSSIRQKIATLGSDKSCIQTVYRLGYQFIKE 229 S + LG+ LA FDR ID+H+S++R+K+ K+ I+T+ GY ++E Sbjct: 178 SIEVLGKHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGYLMVQE 227