BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0054.p (298 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll7188 [E] COG0687 Spermidine/putrescine-binding periplasmic pr... 110 3e-24 SMb21273 [E] COG0687 Spermidine/putrescine-binding periplasmic p... 100 5e-21 SMa2209 [E] COG0687 Spermidine/putrescine-binding periplasmic pr... 99 8e-21 AGl890 [E] COG0687 Spermidine/putrescine-binding periplasmic pro... 91 4e-18 CC3137 [E] COG0687 Spermidine/putrescine-binding periplasmic pro... 86 1e-16 >mll7188 [E] COG0687 Spermidine/putrescine-binding periplasmic protein Mlo Mesorhizobium loti Length = 341 Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 124/255 (48%), Gaps = 16/255 (6%) Query: 3 IVPGADAEWLAKLRAANGNNPAYDIVVFQPDSVQRAAAAGLLEPLEAKNIPNLAKLYPTV 62 + G+D E AK++ + G + +D+ +QR A L+ P++ + N ++ P Sbjct: 57 VFIGSDDEIWAKIKGSEGQD--FDVFAVNTAQLQRYIKADLVSPIDITKLSNQKEVLPRF 114 Query: 63 QEKF-----TKDGKTYAAAFSLGQLGLAYRTDLVKTPPKSWLDLWNPEYKGHVAISSPSY 117 ++ TKDGK Y F +GL Y TD VK P S LW+P YKG V +Y Sbjct: 115 RDLSQVSGDTKDGKVYGIPFCFDSIGLIYDTDKVKPAPTSMSVLWDPAYKGKVL----AY 170 Query: 118 AAGLQFFAGLTHALGGELKNDADVERTF---AKLAELKGNAVAFPDSPGAIQTLLERGDA 174 G F+ LG + + D E+ AKL ELK N ++F + Q + + D Sbjct: 171 DNGEHNFSFTALTLGYKDPFNLDAEQMAAVKAKLVELKRNVLSFYTTADEAQQIYQNNDV 230 Query: 175 WVV--PYWDGRVFALQKSGLKVGFAYPTDGPVVGAANWVIAKGAPNLANAYKLLDFLSSD 232 ++ Y +V ALQK G V + P++G + NWVI+KG + A A K +DF+ + Sbjct: 231 ALIWANYGQQQVKALQKIGAHVAYVNPSEGALAWLDNWVISKGVRDNAAAEKWIDFMLTK 290 Query: 233 KVQKAFSDGSLYGMT 247 KV S+ + +G T Sbjct: 291 KVSGELSERTGFGNT 305 >SMb21273 [E] COG0687 Spermidine/putrescine-binding periplasmic protein Sme Sinorhizobium meliloti Length = 340 Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 132/295 (44%), Gaps = 17/295 (5%) Query: 6 GADAEWLAKLRAANGNNPAYDIVVFQPDSVQRAAAAGLLEPLEAKNIPNLAKLYPTVQEK 65 G E LAK+ A N NP D+ V A AGL++ ++ + N KLY ++ Sbjct: 59 GNSVERLAKMEA-NKANPVVDMAVVSMADALSATRAGLIDKIDTSKLSNFDKLYDIAKDP 117 Query: 66 FTKDGKTYAAAFSLGQLGLAYRTDLVKTPPKSWLDLWNPEYKGHVAISSPSYAAGLQFFA 125 +G + ++ + YR+D V+ SW DL + GHVA+ + + G Sbjct: 118 ---NGDGMSIGYTFYATSIVYRSDKVEVT--SWADLLGDKLAGHVALPNVTTNQGPPTLY 172 Query: 126 GLTHALGGELKNDADVERTFAKLAELKGNAVAFPDSPGAIQTLLERGDAWVVPY----WD 181 + ALG +N D++ A + E K + V F + L+++ + W P W+ Sbjct: 173 MIGEALG---QNTPDLKAAIAAVGEKKDDIVTFYVKSSQLVQLMQQEEIWAAPIGRFSWE 229 Query: 182 GRVFALQKSGLKVGFAYPTDGPVVGAANWVIAKGAPNLANAYKLLDFLSSDKVQKAFSDG 241 G K L + +A P +G G V+AKG+ N A + +DF S ++Q A ++ Sbjct: 230 G----FTKMDLPIKWATPKEGQTGGMNVMVLAKGSKNQDLALQFMDFWLSTEIQTALAEK 285 Query: 242 SLYGMTNQDVQYNDELKTKVQVGEEAYKKLIWIDYATATPKVTDWTNRWSQALGN 296 + N++V+ + E+ + GEE K L I A A W + W+ +G Sbjct: 286 LVDSPANKEVKVSPEIAENLTYGEETVKNLKLIPSAVALDNREAWLSEWNAKVGQ 340 >SMa2209 [E] COG0687 Spermidine/putrescine-binding periplasmic protein Sme Sinorhizobium meliloti Length = 340 Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 87/298 (29%), Positives = 131/298 (43%), Gaps = 22/298 (7%) Query: 1 VEIVPGADAEWLAKLRAANGNNPAYDIVVFQPDSVQRAAAAGLLEPLEAKNIPNLAKLYP 60 +E V GA + L K R D+V + GL + L+ IPN+A LYP Sbjct: 55 IEWVVGASPDHLIKARLGQ-----VDVVTNTLLNSIAGEKEGLWQKLDPAKIPNMANLYP 109 Query: 61 TVQEKFTKDGKTYAAAFSLGQLGLAYRTDLVKTPPKSWLDLWNPEYKGHVAISSPSYAAG 120 Y ++G LAY D V T P +W +LW PEYK V I + Sbjct: 110 NAVHS------PYTVFANVGDYVLAYNKDTVTTVPATWDELWKPEYKNRVVIYGIDHIPT 163 Query: 121 LQFFAGLTHALGGELKNDADVERTFAKLAEL--KGNAVAFPDSPGAIQTLLERGDAWVVP 178 L GG + N VE ++AEL GN + D + +L E GDAW+ Sbjct: 164 LSLTVLQAEKNGGSIDN---VEPGLDRMAELIKSGNLIGSLDVESQMVSLFETGDAWLGM 220 Query: 179 YWDGRVFALQKSGL-KVGFAYPTDG--PVVGAANWVIAKGAPNLANAYKLLDFLSSDKVQ 235 GR+ L G+ V F P +G P++ + N I K A N A A ++++ S +VQ Sbjct: 221 LATGRMKELLSKGVTNVSFVRPEEGTFPLITSVN--IHKDAKNPAMAAAFVNYILSSEVQ 278 Query: 236 KAFSDGSLYGMTNQDVQYNDELKTK-VQVGEEAYKKLIWIDYATATPKVTDWTNRWSQ 292 AF+ +LY T ++ + D+ + + + V +A+ +L D T W + +Q Sbjct: 279 VAFATRNLYAPTVKNAEIPDDFEFRDLLVLNDAFGRLYLPDQEKITANKAGWQQQLNQ 336 >AGl890 [E] COG0687 Spermidine/putrescine-binding periplasmic protein Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 340 Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 9/290 (3%) Query: 6 GADAEWLAKLRAANGNNPAYDIVVFQPDSVQRAAAAGLLEPLEAKNIPNLAKLYPTVQEK 65 G E LAK+ A N NP D+ + A L++ ++A +PN+ LY ++ Sbjct: 59 GNSVERLAKMEA-NKANPVVDLAIVSMADALSATRKDLIQKIDASKVPNIENLYDIAKDP 117 Query: 66 FTKDGKTYAAAFSLGQLGLAYRTDLVKTPPKSWLDLWNPEYKGHVAISSPSYAAGLQFFA 125 +G + + + YRTD +K SW DL HVA + + G Sbjct: 118 ---NGDGMSVGVNFYATSIVYRTDKMKI--DSWADLLKDGIVDHVAFPNVTTNQGPPALY 172 Query: 126 GLTHALGGELKNDADVERTFAKLAELKGNAVAFPDSPGAIQTLLERGDAWVVPYWDGRVF 185 L A+G K+ D+ A + E K + V F + L+++ + W P Sbjct: 173 MLGKAIG---KDTPDLAGAIAAVGEKKDDIVTFYVKSSQLVQLMQQEEIWAAPIGRFSWA 229 Query: 186 ALQKSGLKVGFAYPTDGPVVGAANWVIAKGAPNLANAYKLLDFLSSDKVQKAFSDGSLYG 245 K L + +A P +G G V+ KG N A + +DF S VQKA ++ + Sbjct: 230 PFTKLDLPLAWATPKEGQTGGMNVLVVPKGGKNEELALQFMDFWLSTDVQKALAEKLVDS 289 Query: 246 MTNQDVQYNDELKTKVQVGEEAYKKLIWIDYATATPKVTDWTNRWSQALG 295 TN++V+ +DE+ + G+E + L I W + W+ +G Sbjct: 290 PTNKEVKVSDEVANNITYGDETARSLQLIPSDVTLDNRDKWLSEWNSKVG 339 >CC3137 [E] COG0687 Spermidine/putrescine-binding periplasmic protein Ccr Caulobacter vibrioides Length = 368 Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 111/240 (46%), Gaps = 8/240 (3%) Query: 10 EWLAKLRAANGNNPAYDIVVFQPDSVQRAAAAGLLEPLEAKNIPNLAKLYPTVQEKFTKD 69 E AKL+A N P +D+VV + V R + GLLEPL+ IPN+ + P+ Sbjct: 85 ELFAKLKAGN---PGFDVVVPSNEFVTRMSQGGLLEPLDHAKIPNMKNIDPSFLNPEFDP 141 Query: 70 GKTYAAAFSLGQLGLAYRTDLVKTPPKSWLDLWNP-EYKGHVAISSPSYAAGLQFFAGLT 128 G+ ++ ++ LG+ YR VK P SW L++ +YKG +A+ S S L Sbjct: 142 GRKFSMPYTWLLLGIGYRKSKVKGVPDSWKWLFDSDQYKGRIALLSESADLVRLSAKYLG 201 Query: 129 HALGGELKNDADVERTFAKLAELKGNAVAFPDSPGAIQTLLERGDAWVVPYWDGRVFALQ 188 H++ + D + + L + K AF D G Q +L G+ +V ++G + Sbjct: 202 HSVNN-IPQDM-LPKIEQMLIKQKPFVKAFHDDNG--QDMLMSGEVDLVLEYNGDIAQAM 257 Query: 189 KSGLKVGFAYPTDGPVVGAANWVIAKGAPNLANAYKLLDFLSSDKVQKAFSDGSLYGMTN 248 K + F P +G ++ + I KGAP NA+ +++L + S LY N Sbjct: 258 KEDPDLDFVVPKEGSLINSDTLCIPKGAPRPNNAHAFINYLLDAQAGAEISKTILYPTPN 317