BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0043.p         (123 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1423 [O] COG0330 Membrane protease subunits, stomatin/prohibi...   143   8e-35
NMB1220 [O] COG0330 Membrane protease subunits, stomatin/prohibi...   127   5e-30
NMA1382 [O] COG0330 Membrane protease subunits, stomatin/prohibi...   127   6e-30
RP328 [O] COG0330 Membrane protease subunits, stomatin/prohibiti...    97   6e-21
RC0452 [O] COG0330 Membrane protease subunits, stomatin/prohibit...    97   7e-21

>RSc1423 [O] COG0330 Membrane protease subunits, stomatin/prohibitin
           homologs Rso Ralstonia solanacearum
          Length = 308

 Score =  143 bits (361), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 80/120 (66%), Positives = 103/120 (85%)

Query: 2   KSALIAASEGRKQEQINIATGEREASIAKSEGEKQASINRAEGQAAAIIAIANASAEALR 61
           K ALIAASEG++QEQIN+A G REA+I KSEGEKQA+INRA+G+AAAI+A+A A+A+A++
Sbjct: 185 KRALIAASEGKRQEQINLAAGAREAAIQKSEGEKQAAINRAQGEAAAILAVAEANAQAIQ 244

Query: 62  KTAAAIQSPGGEEAVNLKVAEQYVAAFSQLAKTNNSIIVPANLSDMSTLIASALQVVKAQ 121
           K   AI++ GG +AVNLKVAE+YV+AF  LAK  N++IVP NL D+ST+IASALQ+VK Q
Sbjct: 245 KVGHAIRTEGGIDAVNLKVAEEYVSAFGNLAKQGNTLIVPGNLGDLSTMIASALQIVKQQ 304


>NMB1220 [O] COG0330 Membrane protease subunits, stomatin/prohibitin
           homologs Nme Neisseria meningitidis MC58
          Length = 315

 Score =  127 bits (320), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 100/130 (76%), Gaps = 11/130 (8%)

Query: 2   KSALIAASEGRKQEQINIATGEREASIAKSEGEKQAS-----------INRAEGQAAAII 50
           K A IA SEGRK EQIN+A+G+REA I +SEGE QA+           INRA+G+A ++ 
Sbjct: 181 KRARIAESEGRKIEQINLASGQREAEIQQSEGEAQAAVNASNAEKIARINRAKGEAESLR 240

Query: 51  AIANASAEALRKTAAAIQSPGGEEAVNLKVAEQYVAAFSQLAKTNNSIIVPANLSDMSTL 110
            +A A+AEA+R+ AAA+Q+ GG +AVNLK+AEQYVAAF+ LAK +N++I+PAN++D+ +L
Sbjct: 241 LVAEANAEAIRQIAAALQTQGGADAVNLKIAEQYVAAFNNLAKESNTLIMPANVADIGSL 300

Query: 111 IASALQVVKA 120
           I++ ++++ +
Sbjct: 301 ISAGMKIIDS 310


>NMA1382 [O] COG0330 Membrane protease subunits, stomatin/prohibitin
           homologs NmA Neisseria meningitidis Z2491
          Length = 315

 Score =  127 bits (319), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 100/130 (76%), Gaps = 11/130 (8%)

Query: 2   KSALIAASEGRKQEQINIATGEREASIAKSEGEKQAS-----------INRAEGQAAAII 50
           K A IA SEGRK EQIN+A+G+REA I +SEGE QA+           INRA+G+A ++ 
Sbjct: 181 KRARIAESEGRKIEQINLASGQREAEIQQSEGEAQAAVNASNAEKIARINRAKGEAESLR 240

Query: 51  AIANASAEALRKTAAAIQSPGGEEAVNLKVAEQYVAAFSQLAKTNNSIIVPANLSDMSTL 110
            +A A+AEA+R+ AAA+Q+ GG +AVNLK+AEQYVAAF+ LAK +N++I+PAN++D+ +L
Sbjct: 241 LVAEANAEAIRQIAAALQTQGGADAVNLKIAEQYVAAFNNLAKESNTLIMPANVADIGSL 300

Query: 111 IASALQVVKA 120
           I++ ++++ +
Sbjct: 301 ISAGMKIIDS 310


>RP328 [O] COG0330 Membrane protease subunits, stomatin/prohibitin
           homologs Rpr Rickettsia prowazekii
          Length = 311

 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 75/116 (64%)

Query: 2   KSALIAASEGRKQEQINIATGEREASIAKSEGEKQASINRAEGQAAAIIAIANASAEALR 61
           K A I  SEG +Q +IN A GE+   +  SE      +NRA+G+A AI  +A A+A ++ 
Sbjct: 182 KRAQILESEGNRQAKINHAEGEKAQIVLNSEASYTDQVNRAKGEAEAIGLVATATANSIE 241

Query: 62  KTAAAIQSPGGEEAVNLKVAEQYVAAFSQLAKTNNSIIVPANLSDMSTLIASALQV 117
             AAAIQ  GG +AV LK+AEQY++AF  LAK  N++I+P NLS+ S+ +  AL +
Sbjct: 242 IVAAAIQKTGGSDAVALKIAEQYISAFGNLAKDTNTVILPTNLSEPSSFVTGALTI 297


>RC0452 [O] COG0330 Membrane protease subunits, stomatin/prohibitin
           homologs Rco Rickettsia conorii
          Length = 312

 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 75/116 (64%)

Query: 2   KSALIAASEGRKQEQINIATGEREASIAKSEGEKQASINRAEGQAAAIIAIANASAEALR 61
           K A I  SEG +Q +IN A GE+   +  SE      +NRA+G+A AI  +A A+A ++ 
Sbjct: 182 KRAQILESEGNRQAKINHAEGEKAQIVLNSEASYTDQVNRAKGEAEAIGLVATATANSIE 241

Query: 62  KTAAAIQSPGGEEAVNLKVAEQYVAAFSQLAKTNNSIIVPANLSDMSTLIASALQV 117
             A A+Q  GG +AV LK+AEQY++AF  LAK  N++I+PANLS+ S+ I  AL +
Sbjct: 242 IVATAVQKTGGSDAVALKIAEQYISAFGNLAKDTNTVILPANLSEPSSFITEALTI 297