BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0026.p         (204 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr6852 [T] COG0642 Signal transduction histidine kinase Mlo Mes...   172   6e-43
CC1768 [T] COG0642 Signal transduction histidine kinase Ccr Caul...   137   1e-32
VCA0141 [T] COG4191 Signal transduction histidine kinase regulat...    64   3e-10
CC3225_2 [T] COG0642 Signal transduction histidine kinase Ccr Ca...    60   4e-09
PA5165 [T] COG4191 Signal transduction histidine kinase regulati...    59   6e-09

>mlr6852 [T] COG0642 Signal transduction histidine kinase Mlo Mesorhizobium
           loti
          Length = 450

 Score =  172 bits (435), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 83/169 (49%), Positives = 118/169 (69%), Gaps = 5/169 (2%)

Query: 20  CKTIVSGILLSAGEARGESSVKTTLNTFLGDIAEEFRTTRPIVAFDYRNLIEHDMPVAFD 79
           CK+IVSGIL+S+G+ARGE +++T++  FLGD+ +E+R +R  +  +Y+N  E D  +  D
Sbjct: 280 CKSIVSGILMSSGQARGEGTIRTSIRHFLGDLVQEWRVSRQPLNLEYKNDFEPDEQIVSD 339

Query: 80  SALKQMICNVLDNALEASPRWLSFTAAREENQLKLTVDDTGPGFVPSMLDQIGKPYQSTK 139
           +ALKQ+I NV DNALEAS  W+   A R+  +L ++V D GPGF   +L  +G+PY S+K
Sbjct: 340 TALKQVIFNVFDNALEASQDWVGVAAGRQGEKLVISVRDRGPGFDEGILAALGQPYMSSK 399

Query: 140 AKTGGGLGLFFVVNVARKLGGAVTAHNRSENGHVAGATVCLTLPLSAIS 188
            + GGGLGLF VVNV RKLGG  +A N  +     GA V L+LPL+A++
Sbjct: 400 GRPGGGLGLFLVVNVVRKLGGDFSARNMEQ-----GACVTLSLPLAALT 443


>CC1768 [T] COG0642 Signal transduction histidine kinase Ccr Caulobacter
           vibrioides
          Length = 448

 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 99/170 (58%), Gaps = 5/170 (2%)

Query: 20  CKTIVSGILLSAGEARGESSVKTTLNTFLGDIAEEFRTTRPIVAFDYRNLIEHDMPVAFD 79
           CK IV+G+LLSAGEAR      +TL  F+ ++  E+R +R      Y   +    P+  +
Sbjct: 280 CKAIVTGVLLSAGEARSGEVRVSTLRGFMDEVVAEWRASRADAPLLYETDLRDATPIIAE 339

Query: 80  SALKQMICNVLDNALEASPRWLSFTAAREENQLKLTVDDTGPGFVPSMLDQIGKPYQSTK 139
           S LKQ I N+LDNALEAS   L  +AA  +  +++ V+D GPGF    L   GKPY STK
Sbjct: 340 STLKQGIHNILDNALEASGSALRLSAATRDGWIRIVVEDDGPGFTSEALADFGKPYNSTK 399

Query: 140 AKTGGGLGLFFVVNVARKLGGAVTAHNRSENGHVAGATVCLTLPLSAISL 189
            + G GLGLF +VNV RKLGG   A N      V GA V + LP++ + +
Sbjct: 400 GRAGSGLGLFLLVNVLRKLGGVAEAENL-----VGGARVSIRLPVAMLEV 444


>VCA0141 [T] COG4191 Signal transduction histidine kinase regulating
           C4-dicarboxylate transport system Vch Vibrio cholerae
          Length = 684

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 9/115 (7%)

Query: 65  DYRNLIEHDMPVAF--DSALKQMICNVLDNALEA-----SPRWLSFTAAREENQLKLTVD 117
           D R  +  D+P+    +  L+Q++ N++ NAL+A      P+ LS +A  EE+Q+ + V 
Sbjct: 560 DVRVRLSSDLPLVMGEEQRLRQVLGNLVSNALDAMSQTLEPK-LSISAVSEEDQVIVRVS 618

Query: 118 DTGPGFVPSMLDQIGKPYQSTKAK-TGGGLGLFFVVNVARKLGGAVTAHNRSENG 171
           D G G  P +L  + +P+Q++K    G GLGL  V N  R + G++ A N  + G
Sbjct: 619 DNGCGIAPELLTTMFEPFQTSKKMGEGLGLGLAIVANSLRDMQGSIVATNNPDAG 673


>CC3225_2 [T] COG0642 Signal transduction histidine kinase Ccr Caulobacter
           vibrioides
          Length = 257

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 59/116 (50%), Gaps = 10/116 (8%)

Query: 94  LEASPRWLSFTAAREE-----NQLKLTVDDTGPGFVPSMLDQIGKPYQSTKA-KTGGGLG 147
           +E S RWL   AARE        + ++V DTG G   + L+++  P+ +TK    G GLG
Sbjct: 141 IETSNRWLDGPAAREHGLDPGQYVSVSVSDTGTGIDKATLERVFDPFFTTKPIGQGTGLG 200

Query: 148 LFFVVNVARKLGGAVTAHNRSENGHVAGATVCLTLPLSAISLEAESAATAEERNHV 203
           L  V   AR+  G V  +  SE GH  G TVCL LP      E E++ TA    HV
Sbjct: 201 LSMVYGFARQSNGHVRIY--SEVGH--GTTVCLYLPRHLGEEEVETSTTAPYAPHV 252


>PA5165 [T] COG4191 Signal transduction histidine kinase regulating
           C4-dicarboxylate transport system Pae Pseudomonas
           aeruginosa
          Length = 612

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 9/110 (8%)

Query: 73  DMPV---AFDSALKQMICNVLDNALEA-----SPRWLSFTAAREENQLKLTVDDTGPGFV 124
           D P+   A ++ L+Q++ N+L NAL+A      PR L   A+++++ + LT+ D GPGF 
Sbjct: 481 DAPLWVQAGETRLRQILGNLLTNALDALAEKAPPRRLWVIASQDQHGVTLTLRDNGPGFS 540

Query: 125 PSMLDQIGKPYQSTKAKTGG-GLGLFFVVNVARKLGGAVTAHNRSENGHV 173
              L    +P+ +TK    G GLGL    N+ R LGG +   N  E G V
Sbjct: 541 EDALAHAHEPFFTTKTTAKGLGLGLAICDNLLRALGGRLEMGNHLEGGAV 590