BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0019.p (200 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc225 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, s... 313 1e-85 CC1771 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, s... 301 7e-82 SMb21489 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase,... 298 6e-81 mlr6848 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, ... 273 2e-73 ZcyoC [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, su... 230 1e-60 >AGc225 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 208 Score = 313 bits (802), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 148/197 (75%), Positives = 168/197 (85%) Query: 3 ASPSSRYFVREHHPENGTLLGFWMYLMSDCLIFACLFATYAVLGRNYAGGPTGAELFDLP 62 A P Y +HHPENGT +GFW+YLMSDCLIFA LFATYAVLGR+YA GP+GA+LFDL Sbjct: 12 AEPPVFYLKEDHHPENGTSIGFWLYLMSDCLIFAVLFATYAVLGRSYAAGPSGADLFDLK 71 Query: 63 LVAINTSLLLLSSITYGFAMLEMQKQKVRTTLIWLAVTGLLGAGFIYLELYEFVHLIHEG 122 LVAINT LLLSSITYGFAMLEM+KQKV++TLIWL +TGL G F+ +ELYEF HLI EG Sbjct: 72 LVAINTGFLLLSSITYGFAMLEMEKQKVKSTLIWLGITGLFGLAFLAVELYEFHHLIEEG 131 Query: 123 AGPQRSGFLTSFFALVATHGLHVSFGIVWLITLMFQINKHGLTPENGRRLMCLSMFWHFL 182 AGPQRS FL++FFALV THGLHV+FG +WL+TLM Q+ KHGL N RRLMCLSMFWHFL Sbjct: 132 AGPQRSAFLSAFFALVGTHGLHVTFGTIWLVTLMVQVAKHGLIAANKRRLMCLSMFWHFL 191 Query: 183 DVVWIGVFTFVYLMGVL 199 DV+WIGVF+FVYLMGVL Sbjct: 192 DVIWIGVFSFVYLMGVL 208 >CC1771 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Ccr Caulobacter vibrioides Length = 208 Score = 301 bits (771), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 143/198 (72%), Positives = 165/198 (83%) Query: 3 ASPSSRYFVREHHPENGTLLGFWMYLMSDCLIFACLFATYAVLGRNYAGGPTGAELFDLP 62 A Y +EHHPENGTLLGFW+YLMSDCLIFA LFA YAVLG++YA GP+GA+LFDL Sbjct: 11 ADTDQFYLTKEHHPENGTLLGFWIYLMSDCLIFAVLFACYAVLGQSYAAGPSGADLFDLK 70 Query: 63 LVAINTSLLLLSSITYGFAMLEMQKQKVRTTLIWLAVTGLLGAGFIYLELYEFVHLIHEG 122 LVAINT LLLLSSITYGFAM+ Q ++VR LIWL VTGLLG GF+ LE+YEF HLIHEG Sbjct: 71 LVAINTGLLLLSSITYGFAMIAAQAREVRPVLIWLGVTGLLGVGFLSLEIYEFAHLIHEG 130 Query: 123 AGPQRSGFLTSFFALVATHGLHVSFGIVWLITLMFQINKHGLTPENGRRLMCLSMFWHFL 182 A PQRS FL++FF LV THGLHV+FG++WL+TLM Q+ + GL E RRLMCLSMFWHFL Sbjct: 131 ATPQRSAFLSAFFLLVGTHGLHVTFGVIWLVTLMVQVAQRGLGIEMRRRLMCLSMFWHFL 190 Query: 183 DVVWIGVFTFVYLMGVLP 200 DV+WIGVF+FVYL+GVL Sbjct: 191 DVIWIGVFSFVYLLGVLK 208 >SMb21489 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Sme Sinorhizobium meliloti Length = 210 Score = 298 bits (762), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 140/198 (70%), Positives = 161/198 (81%) Query: 2 DASPSSRYFVREHHPENGTLLGFWMYLMSDCLIFACLFATYAVLGRNYAGGPTGAELFDL 61 + + Y EHHPE T+LGFW+YLMSDCLIFA LFAT+AVLGRNYA GP+ A+LFDL Sbjct: 12 EGQAPAFYLTEEHHPEGSTMLGFWLYLMSDCLIFAVLFATHAVLGRNYAAGPSPADLFDL 71 Query: 62 PLVAINTSLLLLSSITYGFAMLEMQKQKVRTTLIWLAVTGLLGAGFIYLELYEFVHLIHE 121 PLVA+NTS+LL SSITYGFAML M++ + + TL W+AVT L G F+ LE YEF HL+HE Sbjct: 72 PLVAVNTSMLLFSSITYGFAMLAMERYEKKATLTWMAVTALFGIAFVGLEFYEFAHLLHE 131 Query: 122 GAGPQRSGFLTSFFALVATHGLHVSFGIVWLITLMFQINKHGLTPENGRRLMCLSMFWHF 181 GAGPQRS FL+SFF LV THGLHV+ GIVW+ LM Q+ K GL PEN RRLMCLSMFWHF Sbjct: 132 GAGPQRSAFLSSFFTLVGTHGLHVTAGIVWMFVLMAQVAKRGLIPENKRRLMCLSMFWHF 191 Query: 182 LDVVWIGVFTFVYLMGVL 199 LDVVWIGVF+FVYLMGVL Sbjct: 192 LDVVWIGVFSFVYLMGVL 209 >mlr6848 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Mlo Mesorhizobium loti Length = 208 Score = 273 bits (698), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 135/190 (71%), Positives = 153/190 (80%), Gaps = 2/190 (1%) Query: 12 REH-HPE-NGTLLGFWMYLMSDCLIFACLFATYAVLGRNYAGGPTGAELFDLPLVAINTS 69 EH H E + T+LGFW+YLMSDCLIFA LFA Y VLG NYA GP +LFDL LVA+NT+ Sbjct: 18 EEHVHAEGSSTMLGFWLYLMSDCLIFAMLFAAYGVLGANYAAGPAPKDLFDLDLVAVNTT 77 Query: 70 LLLLSSITYGFAMLEMQKQKVRTTLIWLAVTGLLGAGFIYLELYEFVHLIHEGAGPQRSG 129 +LLLSSITYGFAML M K +V T WLAVTGL G F+ +ELYEF H+IHEGA PQRS Sbjct: 78 MLLLSSITYGFAMLTMDKGRVAATQAWLAVTGLFGLAFLSIELYEFAHMIHEGATPQRSA 137 Query: 130 FLTSFFALVATHGLHVSFGIVWLITLMFQINKHGLTPENGRRLMCLSMFWHFLDVVWIGV 189 FL+SFF LV THGLHV+FGIVWL+TLM Q+ + GL N RR+MCLSMFWHFLDVVWIGV Sbjct: 138 FLSSFFTLVGTHGLHVTFGIVWLVTLMTQVARFGLIEANRRRVMCLSMFWHFLDVVWIGV 197 Query: 190 FTFVYLMGVL 199 FTFVYLMG+L Sbjct: 198 FTFVYLMGML 207 >ZcyoC [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 EcZ Escherichia coli O157:H7 EDL933 Length = 204 Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 114/187 (60%), Positives = 138/187 (73%), Gaps = 1/187 (0%) Query: 14 HHPENGT-LLGFWMYLMSDCLIFACLFATYAVLGRNYAGGPTGAELFDLPLVAINTSLLL 72 HH GT + GFW+YLMSDC++F+ LFATYAVL AGGPTG ++F+LP V + T LLL Sbjct: 18 HHDAGGTKIFGFWIYLMSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLL 77 Query: 73 LSSITYGFAMLEMQKQKVRTTLIWLAVTGLLGAGFIYLELYEFVHLIHEGAGPQRSGFLT 132 SSITYG A + M K + WLA+T L GAGFI +E+YEF HLI G GP RSGFL+ Sbjct: 78 FSSITYGMAAIAMYKNNKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLS 137 Query: 133 SFFALVATHGLHVSFGIVWLITLMFQINKHGLTPENGRRLMCLSMFWHFLDVVWIGVFTF 192 +FFALV THGLHV+ G++W+ LM QI + GLT N R+MCLS+FWHFLDVVWI VFT Sbjct: 138 AFFALVGTHGLHVTSGLIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTV 197 Query: 193 VYLMGVL 199 VYLMG + Sbjct: 198 VYLMGAM 204