BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0010.p         (107 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0184 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transp...   102   2e-22
BS_ssuB [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans...    84   7e-17
MJ0412 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transp...    84   7e-17
SMb20569 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate tran...    79   3e-15
CAC0107 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans...    78   4e-15

>PA0184 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Pae Pseudomonas aeruginosa
          Length = 279

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 64/91 (70%)

Query: 1   LTRAYLQQELHRIWQAEGITMILVTHDVEEAIYLGDKVVVMEPRPGRIRRIVPVGLAHPR 60
           LTR  LQ+EL  I +   IT +LVTHDVEEA+YL D+VVVMEPRPGRIRR+V VGLAHPR
Sbjct: 178 LTRQQLQEELLAIRRRTRITTLLVTHDVEEALYLADRVVVMEPRPGRIRRVVEVGLAHPR 237

Query: 61  ERAAVGFAEVKQQVLREFSGDSASLAEPPLR 91
           ER    F   ++ +L E + D   +A PP R
Sbjct: 238 ERGGFDFLRQREALLHELTADGEYVAPPPRR 268


>BS_ssuB [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Bsu Bacillus subtilis
          Length = 274

 Score = 84.3 bits (207), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 57/78 (73%)

Query: 1   LTRAYLQQELHRIWQAEGITMILVTHDVEEAIYLGDKVVVMEPRPGRIRRIVPVGLAHPR 60
            TR +LQ  L  IW+ +  TMILVTHD++E++YLG+++ +++ +PG+I +++P+ LA+PR
Sbjct: 183 FTRKHLQDVLLDIWRKKKTTMILVTHDIDESVYLGNELAILKAKPGKIHKLMPIHLAYPR 242

Query: 61  ERAAVGFAEVKQQVLREF 78
            R    F  ++Q+VL EF
Sbjct: 243 NRTTPDFQAIRQRVLSEF 260


>MJ0412 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Mja Methanococcus jannaschii
          Length = 267

 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 52/75 (69%)

Query: 2   TRAYLQQELHRIWQAEGITMILVTHDVEEAIYLGDKVVVMEPRPGRIRRIVPVGLAHPRE 61
           TR  LQ EL +IWQ E  T+  VTH V+EA+YL D+VVV+  RPGRI+ IV + L  PR+
Sbjct: 182 TRNILQNELLKIWQKEKKTVFFVTHSVDEAVYLSDRVVVLTARPGRIKEIVKIDLERPRD 241

Query: 62  RAAVGFAEVKQQVLR 76
           R ++ F E ++++L 
Sbjct: 242 RTSIEFLEYRKKILN 256


>SMb20569 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Sme Sinorhizobium meliloti
          Length = 256

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 54/79 (68%)

Query: 1   LTRAYLQQELHRIWQAEGITMILVTHDVEEAIYLGDKVVVMEPRPGRIRRIVPVGLAHPR 60
           +T+  +QQEL RIW+ E +TM+LVTHD+EEAIYL D+V+++  +     R + + L  PR
Sbjct: 176 MTKLTMQQELERIWREENVTMVLVTHDLEEAIYLADRVLILPKQKDGAPRAIDIDLPRPR 235

Query: 61  ERAAVGFAEVKQQVLREFS 79
           +R+   F   +Q++LREF 
Sbjct: 236 DRSGARFVRYRQELLREFG 254


>CAC0107 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Cac Clostridium acetobutylicum
          Length = 279

 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 56/92 (60%)

Query: 2   TRAYLQQELHRIWQAEGITMILVTHDVEEAIYLGDKVVVMEPRPGRIRRIVPVGLAHPRE 61
           T++ LQ EL  IW     T++ VTH+VEEA+ L D+VVVM   PGRI+ I  + LA PRE
Sbjct: 168 TKSILQLELQNIWWETKKTIVFVTHNVEEAVLLADRVVVMAANPGRIKNIFEIKLARPRE 227

Query: 62  RAAVGFAEVKQQVLREFSGDSASLAEPPLRSD 93
             +V  + V ++V+R+   +   +A+    SD
Sbjct: 228 AQSVDLSYVAREVMRDLKEEVEKVAKTEYDSD 259