BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0009.p         (156 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0184 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transp...   160   1e-39
AGpT117 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans...   145   3e-35
BS_ssuB [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans...   134   1e-31
MK0603 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transp...   134   1e-31
MJ0412 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transp...   132   2e-31

>PA0184 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Pae Pseudomonas aeruginosa
          Length = 279

 Score =  160 bits (405), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/150 (52%), Positives = 101/150 (67%)

Query: 7   LDIQHLSKSYPVKDGDLAVLDDVTLTITPGEFVSIVGSSGCGKSTLLRLIVGLEEDYRGQ 66
           +  + + K + V    L  +    L I  GEF++IVG+SGCGKSTLLRL++GL+ DY G+
Sbjct: 14  VSFRQVRKHFAVDGRRLEAIQQFDLEIGEGEFIAIVGASGCGKSTLLRLLIGLDRDYDGE 73

Query: 67  VLLDGERIVGTSLRRGIVFQEHRLFPWLTVENNIQLGLLNADLTPGQKRLAVREHIALVG 126
           + +DG  I G    RGIVFQEHRLFPWLTV+ N+ LGL+N  L    K   + E+I LVG
Sbjct: 74  IRVDGRPIAGIGGERGIVFQEHRLFPWLTVQQNVALGLVNEALGETDKAARIDEYIRLVG 133

Query: 127 LEGFEKSYPHQLSGGMAQRVXTNRSARSTP 156
           L GFE++YPHQLSGGMAQRV   R   ++P
Sbjct: 134 LHGFERAYPHQLSGGMAQRVAIARGLVASP 163


>AGpT117 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 267

 Score =  145 bits (367), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/152 (51%), Positives = 98/152 (64%), Gaps = 3/152 (1%)

Query: 6   TLDIQHLSKSYPVKDG-DLAVLDDVTLTITPGEFVSIVGSSGCGKSTLLRLIVGLEEDYR 64
           TL +Q +SKS+   DG ++  LD V L +  G    I+G+SGCGKSTLLR++ GLE  + 
Sbjct: 21  TLLVQGVSKSFSRPDGSEVRALDHVDLVVRDGSVTCIIGASGCGKSTLLRIVAGLEPQFG 80

Query: 65  GQVLLDGERIVGTSLRRGIVFQEHRLFPWLTVENNIQLGLLNADLTPGQKRLAVREHIAL 124
           G VLL G  + G  L RGIVFQ+HRL PW+TVE NI   L    L   ++R  V E + L
Sbjct: 81  GTVLLGGRPLKGPGLDRGIVFQDHRLVPWMTVEANIAFSLHR--LPKAEQRRVVTEKLKL 138

Query: 125 VGLEGFEKSYPHQLSGGMAQRVXTNRSARSTP 156
           VGLEGF +SYPHQLSGGMAQRV   R+    P
Sbjct: 139 VGLEGFGRSYPHQLSGGMAQRVAIARALAHQP 170


>BS_ssuB [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Bsu Bacillus subtilis
          Length = 274

 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/132 (49%), Positives = 90/132 (68%), Gaps = 3/132 (2%)

Query: 25  VLDDVTLTITPGEFVSIVGSSGCGKSTLLRLIVGLEEDYRGQVLLDGERIVGTSLRRGIV 84
           VL+++ L+I PGEF++++G SGCGKSTLL++I GL+ +Y G V ++G  +    +++G +
Sbjct: 40  VLENIELSIAPGEFLTLIGPSGCGKSTLLKIIAGLDSEYDGSVEINGRSVTAPGIQQGFI 99

Query: 85  FQEHRLFPWLTVENNIQLGLLNADLTPGQKRLAVREHIALVGLEGFEKSYPHQLSGGMAQ 144
           FQEHRLFPWLTVE NI   L   D    QK   V E I +V L+G EK+YP +LSGGM+Q
Sbjct: 100 FQEHRLFPWLTVEQNIAADLNLKDPKVKQK---VDELIEIVRLKGSEKAYPRELSGGMSQ 156

Query: 145 RVXTNRSARSTP 156
           RV   R+    P
Sbjct: 157 RVAITRALLREP 168


>MK0603 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Mka Methanopyrus kandleri AV19
          Length = 246

 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 94/154 (61%), Gaps = 5/154 (3%)

Query: 4   AGTLDIQHLSKSYPVKDGDLAVLDDVTLTITPGEFVSIVGSSGCGKSTLLRLIVGLEEDY 63
           A  L ++ L KSY     DL VLD +T  ++ GEF +IVG SGCGK+TLL++I GLE+  
Sbjct: 2   AVILKVEDLHKSY----DDLKVLDGITFEVSEGEFFAIVGPSGCGKTTLLKIIAGLEDYD 57

Query: 64  RGQVLLDGERIVGTSLRRGIVFQEHRLFPWLTVENNIQLGLLNADLTPGQKRLAVREHIA 123
            G+VL+DGE +      R +VFQE+ +FPW TV  N+    L     P +     RE + 
Sbjct: 58  AGRVLVDGEEVREPGPDRALVFQEYAIFPWKTVLENVMFAPLMQGKDPEEAERIARECLK 117

Query: 124 LV-GLEGFEKSYPHQLSGGMAQRVXTNRSARSTP 156
           +V GLEGFE +YP QLSGGM QRV   R+  + P
Sbjct: 118 VVPGLEGFEDAYPKQLSGGMKQRVAIARALAAEP 151


>MJ0412 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Mja Methanococcus jannaschii
          Length = 267

 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 95/150 (63%)

Query: 7   LDIQHLSKSYPVKDGDLAVLDDVTLTITPGEFVSIVGSSGCGKSTLLRLIVGLEEDYRGQ 66
           L +++L+K +      +  LD++ L +   EF++++G SGCGK+TLLR+I GL+    G+
Sbjct: 17  LKVENLTKIFEFNGNRVKALDNINLEVYENEFLTVMGPSGCGKTTLLRIIAGLDYPTEGK 76

Query: 67  VLLDGERIVGTSLRRGIVFQEHRLFPWLTVENNIQLGLLNADLTPGQKRLAVREHIALVG 126
           VLLDG+ + G    RG+VFQ++ L PW TV  N+  GL    +   ++    ++ I +VG
Sbjct: 77  VLLDGKEVKGPGADRGVVFQQYTLMPWRTVLKNVTFGLELKGIPKNERIEIAKKFIKMVG 136

Query: 127 LEGFEKSYPHQLSGGMAQRVXTNRSARSTP 156
           LEGFE +YP+QLSGGM QRV   R+  + P
Sbjct: 137 LEGFEDAYPYQLSGGMQQRVAIARTLANDP 166