BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0008.p (268 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0185 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp... 174 2e-43 PA3448 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp... 138 1e-32 YPO3626 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 137 3e-32 BS_ssuC [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 135 1e-31 PA3443 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp... 134 2e-31 >PA0185 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Pae Pseudomonas aeruginosa Length = 538 Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 87/164 (53%), Positives = 118/164 (71%) Query: 98 RLFERMIGPTFHTLKQISLFAWIPLLSVWFGLGDPAKVAFLSLAAFFPVVLNTFEGIRSV 157 R ER GPTF L+Q+++FAW+PLL+ WFGLG+PAK+ F+++AAFFP++L T GI S+ Sbjct: 373 RPAERFFGPTFAALRQVAIFAWVPLLTAWFGLGEPAKLTFVAIAAFFPLLLATQRGIASL 432 Query: 158 PAELVEAARVLKFNRRQWLFKLILPAASPSILAGIHLALIYAWLATLGAEYLLVSGKGIG 217 P L EAARVL+ + L +L+LP A+PS+ AG+ LALIYAWL T+GAEY + S GIG Sbjct: 433 PPSLGEAARVLRLGPWRRLLRLVLPGAAPSVFAGLRLALIYAWLGTIGAEYFMPSDGGIG 492 Query: 218 NTMIDGRELFLMDLVIFGVIVVGFVGFALNWLAARLERRLLAWR 261 + MI ++LF MDL+ G+++VG G LN L R+E R WR Sbjct: 493 SLMIGAQQLFRMDLIGAGMLLVGLTGALLNALGQRIEARATRWR 536 Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 134/235 (57%), Gaps = 2/235 (0%) Query: 34 LAVKFNWSTSPLLVPVDKVWDTAVEQFRSGELAIALEASLRRDLIGFAIGVSAGLVFGVA 93 +A +W ++ +L + VW +A E +GEL L SLRR G GV++G G Sbjct: 50 VASHRHWMSAQVLPTPELVWQSARELL-AGELWSELAISLRRLAWGLLAGVASGAALGAW 108 Query: 94 FGLSRLFERMIGPTFHTLKQISLFAWIPLLSVWFGLGDPAKVAFLSLAAFFPVVLNTFEG 153 G S ER++ PTF L QI AWIPL ++FG+G+ K+ L A PV ++T G Sbjct: 109 LGFSPRAERLVFPTFSALAQIPTLAWIPLFMLFFGIGELLKLVVLVKAVVVPVTIHTLVG 168 Query: 154 IRSVPAELVEAARVLKFNRRQWLFKLILPAASPSILAGIHLALIYAWLATLGAEYLLVSG 213 +R +L EAA VL+ R +++LILPAA P+ L G+ LAL W + L E LL S Sbjct: 169 VRDAQPKLREAAAVLRLPPRLLVWRLILPAALPAFLTGLRLALAQGWTSLLAVE-LLASS 227 Query: 214 KGIGNTMIDGRELFLMDLVIFGVIVVGFVGFALNWLAARLERRLLAWRGRSVAQF 268 +GIG M+ GR+LF++D+V ++++G VG ++ L+RRLL W + +F Sbjct: 228 EGIGYLMVQGRQLFMLDIVFVCILIIGLVGVGMDRAIQWLDRRLLHWPQAATGEF 282 >PA3448 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Pae Pseudomonas aeruginosa Length = 274 Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 134/247 (54%), Gaps = 2/247 (0%) Query: 15 VPKFLRGWVLPALLLLLWWLAVKFNWSTSPLLVPVDKVWDTAVEQFRSGELAIALEASLR 74 VP R W LP L L W V+ W + + + T VE R GEL + ASL Sbjct: 21 VPGAWRAWALPLLALSSWEALVRLGWLPAYQMPAPSGILLTLVELAR-GELWGHVGASLA 79 Query: 75 RDLIGFAIGVSAGLVFGVAFGLSRLFERMIGPTFHTLKQISLFAWIPLLSVWFGLGDPAK 134 R GFAIG LV G GLSR E + P+F L+ I AW+PLL +WFG+ + K Sbjct: 80 RVAAGFAIGSGLALVVGTWVGLSRRAEAYLEPSFQALRAIPSLAWVPLLLLWFGIDETPK 139 Query: 135 VAFLSLAAFFPVVLNTFEGIRSVPAELVEAARVLKFNRRQWLFKLILPAASPSILAGIHL 194 + ++L AFFPV L G+R V + VE R+ + +R + +++LPAA P++ G+ Sbjct: 140 IVLIALGAFFPVYLALVAGVRGVDRKWVELGRLYRLSRFALVRRILLPAALPNLFTGLRG 199 Query: 195 ALIYAWLATLGAEYLLVSGKGIGNTMIDGRELFLMDLVIFGVIVVGFVGFALNWLAARLE 254 AL +W+ + AE L+ + +G+G + DGRE DLVI ++V+ +G + L LE Sbjct: 200 ALSLSWMFLVAAE-LIAATQGLGYLLSDGRETSRPDLVIAAILVLAALGKLSDGLLRSLE 258 Query: 255 RRLLAWR 261 RR L WR Sbjct: 259 RRALRWR 265 >YPO3626 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Ype Yersinia pestis Length = 265 Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 134/240 (55%), Gaps = 1/240 (0%) Query: 22 WVLPALLLLLWWLAVKFNWSTSPLLVPVDKVWDTAVEQFRSGELAIALEASLRRDLIGFA 81 W+LP L++ W +AV+ W ++ +L V +SGEL L S R LIGF+ Sbjct: 16 WILPVALVVGWQVAVEAGWLSNRILPAPSAVVTAFWALTKSGELWQHLTISSWRALIGFS 75 Query: 82 IGVSAGLVFGVAFGLSRLFERMIGPTFHTLKQISLFAWIPLLSVWFGLGDPAKVAFLSLA 141 IG S GLV GV GLSR ER++ + ++ + A IPL+ +WFG+ + AK+ ++L Sbjct: 76 IGGSIGLVLGVITGLSRWGERLLNSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALG 135 Query: 142 AFFPVVLNTFEGIRSVPAELVEAARVLKFNRRQWLFKLILPAASPSILAGIHLALIYAWL 201 FP+ LNT+ GI+++ + L+E AR + + L +++LP A PSI+ G+ AL + WL Sbjct: 136 TLFPIYLNTYHGIKNIDSGLLEMARSYGLSGFRLLTQVVLPGALPSIMVGVRFALGFMWL 195 Query: 202 ATLGAEYLLVSGKGIGNTMIDGRELFLMDLVIFGVIVVGFVGFALNWLAARLERRLLAWR 261 + AE + + GIG ++ RE D+V+ +++ +G + A LER L W Sbjct: 196 TLIVAET-ISANSGIGYLAMNAREFLQTDVVVVAIVLYALLGKLADGSAQLLERVWLRWH 254 >BS_ssuC [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Bsu Bacillus subtilis Length = 276 Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 138/243 (56%), Gaps = 1/243 (0%) Query: 19 LRGWVLPALLLLLWWLAVKFNWSTSPLLVPVDKVWDTAVEQFRSGELAIALEASLRRDLI 78 ++G +LPA+++ +W + ++ +L + T E SGEL L+ S+ R + Sbjct: 30 MKGLLLPAVIIAIWQVIGGLGVVSATVLPTPVTIVLTFKELILSGELFGHLQISIYRAAL 89 Query: 79 GFAIGVSAGLVFGVAFGLSRLFERMIGPTFHTLKQISLFAWIPLLSVWFGLGDPAKVAFL 138 GF +G GL+ G+ G S+ E + P+ L+ + A PL +WFG + +K+ + Sbjct: 90 GFLLGAGLGLMIGILAGFSKRTELYLDPSLQMLRTVPHLAVTPLFILWFGFDEVSKILLI 149 Query: 139 SLAAFFPVVLNTFEGIRSVPAELVEAARVLKFNRRQWLFKLILPAASPSILAGIHLALIY 198 +L AFFPV +NTF GIR V A+L E ARVL+F Q + K+ILPAA P+IL GI L+L Sbjct: 150 ALGAFFPVYINTFNGIRGVDAKLFEVARVLEFKWHQQISKVILPAALPNILLGIRLSLGI 209 Query: 199 AWLATLGAEYLLVSGKGIGNTMIDGRELFLMDLVIFGVIVVGFVGFALNWLAARLERRLL 258 AWL + AE L+ S G+G ++D R+ + V G+I+ VG + LER+LL Sbjct: 210 AWLGLVVAE-LMGSSSGVGYMIMDARQFSQTNKVFAGIIIFAVVGKLTDSFVRLLERKLL 268 Query: 259 AWR 261 WR Sbjct: 269 KWR 271 >PA3443 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Pae Pseudomonas aeruginosa Length = 262 Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 127/240 (52%), Gaps = 1/240 (0%) Query: 22 WVLPALLLLLWWLAVKFNWSTSPLLVPVDKVWDTAVEQFRSGELAIALEASLRRDLIGFA 81 W LP +LL +W AV+F W +S +L V + RSGE+ L S R IGF Sbjct: 14 WALPLVLLAVWQAAVEFGWLSSRILPAPSAVLEAGWALLRSGEIWQHLAISGWRAAIGFL 73 Query: 82 IGVSAGLVFGVAFGLSRLFERMIGPTFHTLKQISLFAWIPLLSVWFGLGDPAKVAFLSLA 141 IG + GLV G GLS+ ER + + ++ + A IPL+ +WFG+ + AK+ ++L Sbjct: 74 IGGAIGLVLGFVTGLSKWGERFLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALG 133 Query: 142 AFFPVVLNTFEGIRSVPAELVEAARVLKFNRRQWLFKLILPAASPSILAGIHLALIYAWL 201 FP+ LNT+ GIR + L+E AR + ++ILP A PSIL G+ AL + WL Sbjct: 134 TLFPIYLNTYHGIRGIDPGLLEMARSYGLSGFALFRQVILPGALPSILVGVRFALGFMWL 193 Query: 202 ATLGAEYLLVSGKGIGNTMIDGRELFLMDLVIFGVIVVGFVGFALNWLAARLERRLLAWR 261 + AE + S GIG ++ RE D+V+ +++ +G + A LER L W Sbjct: 194 TLIVAETISAS-SGIGYLAMNAREFLQTDVVVLAILLYAVLGKLADLAARGLERVWLRWH 252