BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0007.p (274 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3448 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp... 166 4e-41 BS_ssuC [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 165 1e-40 YPO3626 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 160 4e-39 PA0185 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp... 157 2e-38 AGpT116 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 152 6e-37 >PA3448 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Pae Pseudomonas aeruginosa Length = 274 Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 97/264 (36%), Positives = 156/264 (59%), Gaps = 5/264 (1%) Query: 9 ASSISAQEPRARFYGNWSPRWLALPFPLFLLLLWYVAAQFEWVAPQVLPSPQSVLLTFID 68 A +S + R R G W A PL L W + W+ +P+P +LLT ++ Sbjct: 9 ARRVSRRAWRLRVPGAWR----AWALPLLALSSWEALVRLGWLPAYQMPAPSGILLTLVE 64 Query: 69 LVASGEMFDNLKISLLRVLLGFGVGLAGGLLLGVAMGLSPVFKDYVYPLFKAFSQVPVLG 128 L A GE++ ++ SL RV GF +G L++G +GLS + Y+ P F+A +P L Sbjct: 65 L-ARGELWGHVGASLARVAAGFAIGSGLALVVGTWVGLSRRAEAYLEPSFQALRAIPSLA 123 Query: 129 WLPLLMLLVGIDEALKIILISKAALVPIALNTFKGIENVPARYVEVARVLKFSRWQLLTR 188 W+PLL+L GIDE KI+LI+ A P+ L G+ V ++VE+ R+ + SR+ L+ R Sbjct: 124 WVPLLLLWFGIDETPKIVLIALGAFFPVYLALVAGVRGVDRKWVELGRLYRLSRFALVRR 183 Query: 189 VIFPAALPPIWNGVRYGFTHAWLALVVVELLASSEGLGYMIVFGRQLFQLDVVMAAVVVV 248 ++ PAALP ++ G+R + +W+ LV EL+A+++GLGY++ GR+ + D+V+AA++V+ Sbjct: 184 ILLPAALPNLFTGLRGALSLSWMFLVAAELIAATQGLGYLLSDGRETSRPDLVIAAILVL 243 Query: 249 GAVGYVLDRVLARIEIVLLGWRRS 272 A+G + D +L +E L WR S Sbjct: 244 AALGKLSDGLLRSLERRALRWRDS 267 >BS_ssuC [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Bsu Bacillus subtilis Length = 276 Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 107/268 (39%), Positives = 155/268 (57%), Gaps = 8/268 (2%) Query: 8 PASSISA--QEPRARFYGNWSPRWL-ALPFPLFLLLLWYVAAQFEWVAPQVLPSPQSVLL 64 P ++ A ++P + YG W+ L P ++ +W V V+ VLP+P +++L Sbjct: 11 PKTNAEAVRKKPGRKRYG-----WMKGLLLPAVIIAIWQVIGGLGVVSATVLPTPVTIVL 65 Query: 65 TFIDLVASGEMFDNLKISLLRVLLGFGVGLAGGLLLGVAMGLSPVFKDYVYPLFKAFSQV 124 TF +L+ SGE+F +L+IS+ R LGF +G GL++G+ G S + Y+ P + V Sbjct: 66 TFKELILSGELFGHLQISIYRAALGFLLGAGLGLMIGILAGFSKRTELYLDPSLQMLRTV 125 Query: 125 PVLGWLPLLMLLVGIDEALKIILISKAALVPIALNTFKGIENVPARYVEVARVLKFSRWQ 184 P L PL +L G DE KI+LI+ A P+ +NTF GI V A+ EVARVL+F Q Sbjct: 126 PHLAVTPLFILWFGFDEVSKILLIALGAFFPVYINTFNGIRGVDAKLFEVARVLEFKWHQ 185 Query: 185 LLTRVIFPAALPPIWNGVRYGFTHAWLALVVVELLASSEGLGYMIVFGRQLFQLDVVMAA 244 +++VI PAALP I G+R AWL LVV EL+ SS G+GYMI+ RQ Q + V A Sbjct: 186 QISKVILPAALPNILLGIRLSLGIAWLGLVVAELMGSSSGVGYMIMDARQFSQTNKVFAG 245 Query: 245 VVVVGAVGYVLDRVLARIEIVLLGWRRS 272 +++ VG + D + +E LL WR S Sbjct: 246 IIIFAVVGKLTDSFVRLLERKLLKWRNS 273 >YPO3626 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Ype Yersinia pestis Length = 265 Score = 160 bits (404), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 143/237 (60%) Query: 34 FPLFLLLLWYVAAQFEWVAPQVLPSPQSVLLTFIDLVASGEMFDNLKISLLRVLLGFGVG 93 P+ L++ W VA + W++ ++LP+P +V+ F L SGE++ +L IS R L+GF +G Sbjct: 18 LPVALVVGWQVAVEAGWLSNRILPAPSAVVTAFWALTKSGELWQHLTISSWRALIGFSIG 77 Query: 94 LAGGLLLGVAMGLSPVFKDYVYPLFKAFSQVPVLGWLPLLMLLVGIDEALKIILISKAAL 153 + GL+LGV GLS + + + VP L +PL++L GIDE+ KI L++ L Sbjct: 78 GSIGLVLGVITGLSRWGERLLNSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTL 137 Query: 154 VPIALNTFKGIENVPARYVEVARVLKFSRWQLLTRVIFPAALPPIWNGVRYGFTHAWLAL 213 PI LNT+ GI+N+ + +E+AR S ++LLT+V+ P ALP I GVR+ WL L Sbjct: 138 FPIYLNTYHGIKNIDSGLLEMARSYGLSGFRLLTQVVLPGALPSIMVGVRFALGFMWLTL 197 Query: 214 VVVELLASSEGLGYMIVFGRQLFQLDVVMAAVVVVGAVGYVLDRVLARIEIVLLGWR 270 +V E ++++ G+GY+ + R+ Q DVV+ A+V+ +G + D +E V L W Sbjct: 198 IVAETISANSGIGYLAMNAREFLQTDVVVVAIVLYALLGKLADGSAQLLERVWLRWH 254 >PA0185 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Pae Pseudomonas aeruginosa Length = 538 Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/226 (41%), Positives = 141/226 (62%), Gaps = 1/226 (0%) Query: 44 VAAQFEWVAPQVLPSPQSVLLTFIDLVASGEMFDNLKISLLRVLLGFGVGLAGGLLLGVA 103 VA+ W++ QVLP+P+ V + +L+A GE++ L ISL R+ G G+A G LG Sbjct: 50 VASHRHWMSAQVLPTPELVWQSARELLA-GELWSELAISLRRLAWGLLAGVASGAALGAW 108 Query: 104 MGLSPVFKDYVYPLFKAFSQVPVLGWLPLLMLLVGIDEALKIILISKAALVPIALNTFKG 163 +G SP + V+P F A +Q+P L W+PL ML GI E LK++++ KA +VP+ ++T G Sbjct: 109 LGFSPRAERLVFPTFSALAQIPTLAWIPLFMLFFGIGELLKLVVLVKAVVVPVTIHTLVG 168 Query: 164 IENVPARYVEVARVLKFSRWQLLTRVIFPAALPPIWNGVRYGFTHAWLALVVVELLASSE 223 + + + E A VL+ L+ R+I PAALP G+R W +L+ VELLASSE Sbjct: 169 VRDAQPKLREAAAVLRLPPRLLVWRLILPAALPAFLTGLRLALAQGWTSLLAVELLASSE 228 Query: 224 GLGYMIVFGRQLFQLDVVMAAVVVVGAVGYVLDRVLARIEIVLLGW 269 G+GY++V GRQLF LD+V ++++G VG +DR + ++ LL W Sbjct: 229 GIGYLMVQGRQLFMLDIVFVCILIIGLVGVGMDRAIQWLDRRLLHW 274 Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 125/236 (52%), Gaps = 9/236 (3%) Query: 42 WYVAAQFEWVAPQVLPSPQSVLLTF----IDLVASGEMFDNLKISLLRVLLGFGVGLAGG 97 W A+ EWV P +L SP V +D G +FD+LK R L G +G G Sbjct: 307 WQSASSAEWVDPAILASPLEVARATWSGALDGSLPGALFDSLK----RTLGGLLLGGGLG 362 Query: 98 LLLGVAMGLSPVFKDYVYPLFKAFSQVPVLGWLPLLMLLVGIDEALKIILISKAALVPIA 157 L G+ +GL + + P F A QV + W+PLL G+ E K+ ++ AA P+ Sbjct: 363 FLGGLLLGLWRPAERFFGPTFAALRQVAIFAWVPLLTAWFGLGEPAKLTFVAIAAFFPLL 422 Query: 158 LNTFKGIENVPARYVEVARVLKFSRWQLLTRVIFPAALPPIWNGVRYGFTHAWLALVVVE 217 L T +GI ++P E ARVL+ W+ L R++ P A P ++ G+R +AWL + E Sbjct: 423 LATQRGIASLPPSLGEAARVLRLGPWRRLLRLVLPGAAPSVFAGLRLALIYAWLGTIGAE 482 Query: 218 -LLASSEGLGYMIVFGRQLFQLDVVMAAVVVVGAVGYVLDRVLARIEIVLLGWRRS 272 + S G+G +++ +QLF++D++ A +++VG G +L+ + RIE WR + Sbjct: 483 YFMPSDGGIGSLMIGAQQLFRMDLIGAGMLLVGLTGALLNALGQRIEARATRWRHA 538 >AGpT116 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 313 Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 136/237 (57%), Gaps = 1/237 (0%) Query: 38 LLLLWYVAAQFEWVAPQVLPSPQSVLLTFIDLVASGEMFDNLKISLLRVLLGFGVGLAGG 97 L+ +W VA F V P +LP+P +++ T ++ SGE+ +++ +S RVL GFG+ Sbjct: 75 LVTVWQVACDFGAVRPVLLPAPSTIVRTIWNMTLSGELAEHVAVSSARVLQGFGIAAVLA 134 Query: 98 LLLGVAMGLSPVFKDYVYPLFKAFSQVPVLGWLPLLMLLVGIDEALKIILISKAALVPIA 157 L LG+ MGL + + +P + W+PL +L GI E KI +I A PI Sbjct: 135 LALGIVMGLIGPLNRLADLMVQVLKPIPPIAWIPLSILWFGIGEEAKIFIIVLGAFFPIL 194 Query: 158 LNTFKGIENVPARYVEVARVLKFSRWQLLTRVIFPAALPPIWNGVRYGFTHAWLALVVVE 217 ++T + RYVE+ARVL+ R + +V+ P ALP I +G+R G T +W+ +V E Sbjct: 195 VSTLDAVHQTDVRYVELARVLEVPRLNFIRQVMIPGALPQIMSGLRLGITMSWMCVVAAE 254 Query: 218 LLASSEGLGYMIVFGRQLFQLDVVMAAVVVVGAVGYVLDRVLARIEIVLLGWRRSGF 274 L+A+S G+G++I+ GR + VV+A ++ +G +G + D L E L+ W R+GF Sbjct: 255 LIAASSGIGFLIMDGRVMSNASVVLAGMITLGVLGKLTDDALRFAERRLVRW-RAGF 310