BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0006.p (362 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0186 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp... 197 2e-50 SMc02344 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate tran... 124 3e-28 BS_ssuA [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 100 7e-21 AGpT119 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 97 4e-20 PA3449 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp... 92 2e-18 >PA0186 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Pae Pseudomonas aeruginosa Length = 353 Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 109/267 (40%), Positives = 163/267 (61%), Gaps = 1/267 (0%) Query: 66 VEEEFKADGIKVEWFFFKGAGPAVNEALSNKQLDFAFQGDLPSIVAKSAGLKTRLILATG 125 +E+EF DGI V+W FFKGAGP VNEA +N Q+DFA+ GDL +I+ KS GL +RL+ AT Sbjct: 64 LEKEFANDGIAVKWSFFKGAGPVVNEAFANGQVDFAYLGDLAAIIGKSGGLDSRLLAATA 123 Query: 126 VRSNIYLAVPPDSPIQSVKDLRGKRVAIFKGTNAQLPINRVLEANGLQERDLRAINLDQA 185 N YL V P S I++++DL+GKRV IF+GT +QL + L + GL E+DL+ INLD + Sbjct: 124 RGVNHYLGVQPGSGIKTLEDLKGKRVGIFRGTASQLSFDNALASVGLSEKDLKVINLDFS 183 Query: 186 TTLAALSTKDIDAAFGNINLLRLRDKNAARIVYSSKGGSPIFTTQSHVLVTEEFAQQYPE 245 L+AL+ + IDA +G L LRD+ A I S++ + T Q+ ++ + F +P+ Sbjct: 184 AALSALAARQIDATWGLAGLFALRDRGLAEIPLSTRDLNGAGTLQALLVGSGAFVDAHPD 243 Query: 246 ITARVVKTFVKTSKWASDEVNREEVLRLWAK-AGTPYEHWREDYDGQPLRVRINPNFDPF 304 IT R++K ++ W + E NR+ + L +K A P + +Y G+ L ++P D Sbjct: 244 ITERLLKVQLQAQDWLAREENRDAYIELVSKQASYPVVILQSEYRGRKLGDALSPRLDAD 303 Query: 305 LVARYKDSVEQAYRLKLSRSKFDVDQW 331 + R S++ A R L R +F +QW Sbjct: 304 FLGRLDASIQAAKRFGLIRREFSAEQW 330 >SMc02344 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Sme Sinorhizobium meliloti Length = 344 Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 109/353 (30%), Positives = 174/353 (49%), Gaps = 35/353 (9%) Query: 5 RRTVLKQLAAGGVGVGTAMLGLQARAANKPAIIRIGVAQPGIGNPPQFSGSSAAVANAKG 64 RRT+LK A + + A L + KP IRIG PG +F + K Sbjct: 10 RRTLLKLALALSI-LPIAGLAPASAGEAKPDAIRIGSTAPG---HLKF-----ILYRHKK 60 Query: 65 WVEEEFKADGIKVEWFFFKGAGPAVNEALSNKQLDFAFQGDLPSIVAKSAGLKTRLI-LA 123 +E+EF +GIK+E F G G A AL + LDF + G+ PS+ + G +LI L+ Sbjct: 61 LLEDEFSKEGIKIELTTFDG-GSAATVALGSGALDFTYIGNNPSLRLAATGADVKLIGLS 119 Query: 124 TGVRSN-IYLAVPPDSPIQSVKDLRGKRVAIFKGTNAQLPINRVLEANGLQERDLRAINL 182 + RSN + V PDSPI+ ++DL+GK+VA GT + L+A GL D+ ++NL Sbjct: 120 SWNRSNETQIVVKPDSPIRKIEDLKGKKVAYLSGTVRHSTFAKALKAAGLSIGDVESLNL 179 Query: 183 DQATTLAALSTKDIDAAFGNIN-LLRLRDKNAARIVYSSK-GGSPIFTTQSHVLVTEEFA 240 ++ AL+ D+DA + + +L ++ AR+++ + GSP + + V +FA Sbjct: 180 GIESSGPALARGDVDAIVESTGPVQKLVEEGQARVIFDAGVSGSPEWAVPHLISVNGDFA 239 Query: 241 QQYPEITARVVKTFVKTSKWASDEVNREEVLRLWAK-AGTPYEHWREDYDGQPLRVRINP 299 ++YP+I AR++ V ++WA + N EE + ++ K G R Y P Sbjct: 240 RKYPQIVARLLAVDVAAARWA--DANPEETIAIFVKETGNSDMAVRATY----------P 287 Query: 300 NFDPFLVARYKDSV------EQAYRLK--LSRSKFDVDQWIDQRYLKAALKEL 344 N + D+ E+A+ L + K D WID+ + +AA+K L Sbjct: 288 NGKFYQDPEITDAAVRALQGEEAFMADAGLLKGKVDYRTWIDRSFYEAAIKRL 340 >BS_ssuA [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Bsu Bacillus subtilis Length = 332 Score = 100 bits (248), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 89/312 (28%), Positives = 155/312 (49%), Gaps = 24/312 (7%) Query: 37 IRIGVAQPGIGNPPQFSGSSAAVANAKGWVEEEFKADGIKVEWFFFKGAGPAVNEALSNK 96 IRIG+ Q S S +A KGW E+ F+ +GIKV+W F+ +GP E L+ Sbjct: 33 IRIGIQQ---------SLSPLLIAKEKGWFEDAFEKEGIKVKWVEFQ-SGPPQFEGLAAD 82 Query: 97 QLDFAFQGDLPSIVAKSAGLKTRLILAT--GVRSNIYLAVPPDSPIQSVKDLRGKRVAIF 154 +LDF+ G+ P I ++AG+ + I + G+++N L V +S IQ VK L+GK++A+ Sbjct: 83 KLDFSQVGNSPVIAGQAAGIDFKEIGLSQDGLKANGIL-VNQNSGIQDVKGLKGKKIAVA 141 Query: 155 KGTNAQLPINRVLEANGLQERDLRAINLDQATTLAALSTKDIDAAFGNINLLRLRD-KNA 213 KG++ + + L+ GL D+ I L +A +DA L L K+ Sbjct: 142 KGSSGFDFLYKALDQVGLSANDVTIIQLQPDEAASAFENGSVDAWSIWEPYLSLETMKHG 201 Query: 214 ARIVYSSKGGSPIFTTQSHVLVTEEFAQQYPEITARVVKTFVKTSKWASDEVNREEVLRL 273 A+I+ + G S + LV +F++++P+ R +K F K W + ++ E L Sbjct: 202 AKILVN--GESTDLYSPGFTLVRTKFSEEHPDEVVRFLKVFNKAVVWQKEHLD--EAADL 257 Query: 274 WAKAGTPYEHWREDY--DGQPLRVRINPNFDPFLVARYKDSVEQAYRLKLSRSKFDVDQW 331 ++ + E+ + +PL I+ + +V +++ + +R K K DV Sbjct: 258 YSDIKDLDKKVVENVLKNTEPLNEIISDD----IVKAQQETADFQFRTKAIDKKIDVKDV 313 Query: 332 IDQRYLKAALKE 343 +D ++K AL+E Sbjct: 314 VDNTFIKKALEE 325 >AGpT119 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 320 Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 9/206 (4%) Query: 46 IGNPPQFSGSSAAVANAKGWVEEEFKADGIK---VEWFFFKGAGPAVNEALSNKQLDFAF 102 IG P S+ +A KGWV+EEF G+K ++W F G GP VNEA ++ LD A Sbjct: 31 IGFMPFVPYSAILLAKQKGWVDEEFTKAGLKDVEIKWHQFAG-GPPVNEAFASGALDIAA 89 Query: 103 QGDLPSIVAKSAGLKTRLI-LATGVRSNIYLAVPPDSPIQSVKDLRGKRVAIFKGTNAQL 161 GD PS++A + G+ TR + LA L V DS +++VKDL+GK+VA +G N Sbjct: 90 LGDTPSLIAFANGIDTRFVGLACKGAKAEALIVLKDSSVKTVKDLKGKKVATLRGGNVHE 149 Query: 162 PINRVLEANGLQERDLRAINLDQATTLAALSTKDIDAAFGNINLL-RLRDKNAARIVYSS 220 + VL GL+ D+ +NL AL+ D+DA LL +L + +R + Sbjct: 150 LLVLVLAEAGLKISDVEFLNLGLQDMGIALTKGDVDAVLVWEPLLTKLDSEGVSRTL--- 206 Query: 221 KGGSPIFTTQSHVLVTEEFAQQYPEI 246 + G+ + + + ++ FA ++P++ Sbjct: 207 RDGAGLKSNLNPIVALGSFAAKHPDV 232 >PA3449 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Pae Pseudomonas aeruginosa Length = 333 Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 112/220 (50%), Gaps = 7/220 (3%) Query: 64 GWVEEEFKADGIKVEWFFFKGAGPAVNEALSNKQLDFAFQGDLPSIVAKSAGLKTRLILA 123 GW+E+ G +V W F +G+ ++ E L+ +DFA L +++A++ G R + Sbjct: 50 GWLEKSLDGSGTRVRWVFSQGSNRSL-EYLNAGSVDFASTAGLAAVLARANGSPVRTVYV 108 Query: 124 TGVRSNIYLAVPPDSPIQSVKDLRGKRVAIFKGTNAQLPINRVLEANGLQERDLRAINLD 183 L V DSPI+S+ +L+G++VA KGT+ L + R L + GL + DLR ++L Sbjct: 109 ASRPEWTALLVRKDSPIRSLAELKGRKVAATKGTDPYLFLLRSLHSVGLDKNDLRIVHLQ 168 Query: 184 QATTLAALSTKDIDAAFG-NINLLRLRDKNAARIVYSSKGGSPIFTTQSHVLVTEEFAQQ 242 AL +DA G + ++ + +R++Y + G F + + V E+FA++ Sbjct: 169 HPDGRVALEKGQVDAWAGLDPHMAASELQAGSRLLYRNLG----FNSYGVLNVREDFAER 224 Query: 243 YPEITARVVKTFVKTSKWASDEVNREEVLRLWAKAGTPYE 282 +P++ +V+ + + W + L L +AG P E Sbjct: 225 HPQLIRQVLAAYEQARHWVIGHPDEAAQL-LAEEAGLPLE 263