BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0253.p
         (639 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311294|ref|YP_003775386.1| threonyl-tRNA synthetase [Herba...  1251   0.0  
gi|300309711|ref|YP_003773803.1| prolyl-tRNA synthetase [Herbasp...    57   5e-09

>gi|300311294|ref|YP_003775386.1| threonyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 635

 Score = 1251 bits (3237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/635 (93%), Positives = 617/635 (97%)

Query: 5   MVSVRLPDGSQRQFDAPVTVAQVAANIGAGLAKAALAGKVDGKLVDTSFLIEKDSDLAIV 64
           MVSVRLPDGSQRQFD PVTVAQVAANIG GLAKAALAG+VDGKLVDTS+LI+KD++L+I+
Sbjct: 1   MVSVRLPDGSQRQFDNPVTVAQVAANIGTGLAKAALAGRVDGKLVDTSYLIDKDAELSII 60

Query: 65  TDKDADGLEVIRHSTAHLLAYAVKELFPDAQVTIGPVIDNGFYYDFAYKRPFTPEDLAAI 124
           TDKDADGLEVIRHSTAHLLAYAVKELFP+AQVTIGPVIDNGFYYDF+YKRPFTPEDL AI
Sbjct: 61  TDKDADGLEVIRHSTAHLLAYAVKELFPEAQVTIGPVIDNGFYYDFSYKRPFTPEDLQAI 120

Query: 125 EKKMAELAKKDEPVTRKVLPRDEAVAYFKSIGEAYKAEIIESIPQDQDVSLYTEGSFTDL 184
           EKKMAELAKKDEPVTRKVLPRDEAVAYFKSIGE YKAEII SIPQ++DVSLYTEGSFTDL
Sbjct: 121 EKKMAELAKKDEPVTRKVLPRDEAVAYFKSIGEDYKAEIIASIPQNEDVSLYTEGSFTDL 180

Query: 185 CRGPHVPSTGKLKVFKLMKLAGAYWRGDSNNEMLQRVYGTAWAKKEDQESYLHMLEEAEK 244
           CRGPHVPSTGKLKVFKLMKLAGAYWRGDSNNEMLQRVYGTAWAKKEDQE+YLHMLEEAEK
Sbjct: 181 CRGPHVPSTGKLKVFKLMKLAGAYWRGDSNNEMLQRVYGTAWAKKEDQEAYLHMLEEAEK 240

Query: 245 RDHRKLGRALDFFHFQDEAPGLIFWHPKGWSIWQQVEQYMRRVYQDSGYQEVKAPQILDR 304
           RDHRKLGRALD FHFQDEAPGLIFWHPKGW+IWQQVEQYMRRVYQD+GYQEVKAPQILDR
Sbjct: 241 RDHRKLGRALDLFHFQDEAPGLIFWHPKGWTIWQQVEQYMRRVYQDNGYQEVKAPQILDR 300

Query: 305 SLWEKTGHWENYRENMFTTESENRAYALKPMNCPGHIQIYNSGLHSYRDLPLRYGEFGQC 364
           SLWEKTGHWENYRENMFTTESENRAYALKPMNCPGHIQI+NSGLHSYRDLPLRYGEFGQC
Sbjct: 301 SLWEKTGHWENYRENMFTTESENRAYALKPMNCPGHIQIFNSGLHSYRDLPLRYGEFGQC 360

Query: 365 HRNEPSGALHGMMRVRGFTQDDGHIFCTEDQIQDEVAAFNKVVREVYDNFGFTDVAVKLA 424
           HRNEPSGALHGMMRVRGFTQDDGHIFCTEDQIQ+EVAAFN+VVREVYD FGF +VAVKLA
Sbjct: 361 HRNEPSGALHGMMRVRGFTQDDGHIFCTEDQIQEEVAAFNRVVREVYDCFGFKEVAVKLA 420

Query: 425 LRPEKRIGEEAVWDKAENALREAIRASGTEWEELPGEGAFYGPKIEYHLKDSIGRSWQCG 484
           LRPEKRIG E VWDKAENALREAIRASG+EWEELPGEGAFYGPKIEYHLKDSIGRSWQCG
Sbjct: 421 LRPEKRIGAEEVWDKAENALREAIRASGSEWEELPGEGAFYGPKIEYHLKDSIGRSWQCG 480

Query: 485 TMQVDFSMPARLGAEYVTEDNDRKVPVMLHRAIVGSLERFIAILIENHAGAMPLWLAPEQ 544
           TMQVDFSMPARLGAEYVTEDN+RKVPVMLHRAIVGSLERFIAILIENHAGAMPLWLAP Q
Sbjct: 481 TMQVDFSMPARLGAEYVTEDNNRKVPVMLHRAIVGSLERFIAILIENHAGAMPLWLAPTQ 540

Query: 545 VVILNISDAQADYVKNVAQTLKKQGFRVVTDLRNEKITYKIRQHSLQKPPYILVVGDKER 604
           VVILNISDAQADYV+NVAQTLKKQGFRV TDLRNEKITYKIRQHS+QKPPYILVVGDKER
Sbjct: 541 VVILNISDAQADYVQNVAQTLKKQGFRVETDLRNEKITYKIRQHSIQKPPYILVVGDKER 600

Query: 605 DTNTVAVRARGNVDLGVMPIDVLVERLRTEVETKA 639
           D NTVAVRARGNVDLGVM ID LVERL+ EV  KA
Sbjct: 601 DANTVAVRARGNVDLGVMSIDTLVERLKDEVAAKA 635


>gi|300309711|ref|YP_003773803.1| prolyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 575

 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 3/159 (1%)

Query: 265 GLIFWHPKGWSIWQQVEQYMRRVYQDSGYQEVKAPQILDRSLWEKTGHWENY-RENMFTT 323
           G+  + P G  + ++VE  +R     +G  E+  P +    LW++TG W     E M   
Sbjct: 38  GIYTYMPMGLRVIRKVEAIVREEMNRAGAVELLMPVVQPAELWQETGRWNKMGAELMRVK 97

Query: 324 ESENRAYALKPMNCPGHIQIYNSGLHSYRDLPLRYGEFGQCHRNEPSGALHGMMRVRGFT 383
           +   R +A++P +      +  S L SY+ LP+ +       R+E      G+MR R FT
Sbjct: 98  DRHGRDFAIQPTSEEVVTDVARSELRSYKQLPVNFYHIQTKFRDERRPRF-GLMRGREFT 156

Query: 384 QDDGHIFCTE-DQIQDEVAAFNKVVREVYDNFGFTDVAV 421
             D + F  + D ++    A       ++  FG    AV
Sbjct: 157 MKDAYSFDRDVDGLKKSYQAMYDAYVRIFTRFGLEFRAV 195


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,978,620
Number of extensions: 83862
Number of successful extensions: 222
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 2
Length of query: 639
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 548
Effective length of database: 1,188,985
Effective search space: 651563780
Effective search space used: 651563780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)