BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0252.p
         (389 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311304|ref|YP_003775396.1| EPS biosynthesis protein [Herba...   288   7e-79

>gi|300311304|ref|YP_003775396.1| EPS biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score =  288 bits (736), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 149/374 (39%), Positives = 219/374 (58%), Gaps = 3/374 (0%)

Query: 19  VTPYVGYGISYDSNLLRLPSAASAQTMGIGSNLSDFTRSALFGLTVDKTFSQQHLTANLN 78
           VTPYV Y I YD NLLRL   A AQ     + +SD  +S   G+  D+ FS+QH+  +  
Sbjct: 38  VTPYVQYSILYDDNLLRLRDPAQAQATLGTTQMSDTVQSKAGGVRFDRMFSRQHIRLDAR 97

Query: 79  AAKVNYDRFSQLDHIDKNAALNWNWHAGQQFQGNVGTSYTQGLTPFIDFHLLERNLRTTE 138
             +  +D F Q D+  ++    W W  G+   G++G  Y+QGLTPF +  +LE+N+RT +
Sbjct: 98  LTQNTFDNFRQFDNDQRDLNAYWGWVLGEHLSGDIGYVYSQGLTPFQNLRVLEKNIRTAQ 157

Query: 139 KFYADGSWLLGPSWRLRGGLVHSKLWYDLASQQPGNNTQNQEELGLDYLAPSGSTIGLQL 198
             YA  +W L P W +RG      L YDL S Q  + +Q+  E+GLDY A SGS  GLQ+
Sbjct: 158 TRYATAAWQLHPDWTVRGQYSRFSLGYDLPSLQNNSFSQDIYEMGLDYTARSGSIAGLQV 217

Query: 199 RHIKADYPNPELNGAIAVLNGYSQDELKAKIDWLLTGKTTLHFLGGWVSRKQDEFSSRNF 258
           RH + +YP P L     + N +SQDELKA++ WL + KT L FLGG+V R++D   + NF
Sbjct: 218 RHTRGNYPEPALVSGALINNSFSQDELKARVSWLYSDKTKLQFLGGYVRRERDTGGAANF 277

Query: 259 SGINTRVSADWLATGKIAVSVAGWREIGAIDDVSVVYSLNHGASIGSSWQYSEQIRLVAQ 318
           SG+N R+ ADW AT K A ++  +REIG + D+   Y+L +G S+ + W+ +E+IR+ A 
Sbjct: 278 SGLNARLIADWDATAKTAFTMNLYREIGGVSDIDANYALTNGLSLSTRWRATEKIRVDAG 337

Query: 319 YRYIERNFNQSSELGAAYPN---DTLRDMALSLVYNPTRQWRIQLSGTRSTQTLQNAAGG 375
             Y  R++N ++ +    P+   DT +  +  ++Y P R   +  +  R   +   +  G
Sbjct: 338 IDYQRRDYNGAAVVTGVTPSGRKDTYKKYSFGVIYAPLRSLSLMAAIYREDSSSNISGFG 397

Query: 376 YVSNGVMLTTRYTF 389
           YVSNG+ LTTRY F
Sbjct: 398 YVSNGIALTTRYEF 411


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,212,070
Number of extensions: 50391
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 302
Effective length of database: 1,207,925
Effective search space: 364793350
Effective search space used: 364793350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)