BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0251.p (463 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311305|ref|YP_003775397.1| glucosyltransferase involved in... 443 e-125 gi|300312044|ref|YP_003776136.1| lipopolysaccharide synthesis su... 131 1e-31 gi|300313506|ref|YP_003777598.1| galactosyltransferase [Herbaspi... 107 2e-24 >gi|300311305|ref|YP_003775397.1| glucosyltransferase involved in lipopolysaccharide synthesis protein [Herbaspirillum seropedicae SmR1] Length = 441 Score = 443 bits (1140), Expect = e-125, Method: Compositional matrix adjust. Identities = 233/444 (52%), Positives = 308/444 (69%), Gaps = 3/444 (0%) Query: 20 IILGSLYMSILIQDEVFTGSYLVLMIIAFFVSSYIYEQIDLYRTLHVGKQHAYAVDIFLG 79 +I+ L++ + + F+G Y +L I+AFF+SSY + + R K IF+ Sbjct: 1 MIVAYLWVLVRLHGVPFSGDYWMLAIMAFFISSYFFTEFHERRLRRNPKGTRPVASIFVD 60 Query: 80 WAIIITLLALIGQGTGLRYEFSDKVIAIWFVSAPIALLLSRLTAYMLAFHFGKHPEVRSA 139 W ++ +L LIG +F+ V+A W + P+ LL+S+ + EV A Sbjct: 61 WLAVVAVLGLIGYVCEFYQQFAPGVLAAWVIGTPVGLLVSQYAQSRVMRDLHTKGEVSKA 120 Query: 140 VIVGTNDPEGGMLSRLASQGKASQSLDIRGFFANPDELANLHAPFSSPHLGAIADVSAYV 199 +I+G N + R+ + + + + GFF + + F+ P +G ++DV+AYV Sbjct: 121 IIIGVNPAALKLAERMDNY--PALMIKLMGFFDDREIGRQPQGTFT-PLMGKMSDVAAYV 177 Query: 200 QEHKIRTIFICLPMTEQHKVLALMEELRDTTASVYLVPDIYTHGFIQARLDHVGGVPVIG 259 ++H I ++I +P++ Q +VL +++EL+DTTAS+Y VPDIY IQAR D+VGG+ V+ Sbjct: 178 RKHNINMVYISMPISAQPRVLQMIDELQDTTASIYFVPDIYIFNLIQARFDYVGGMAVMA 237 Query: 260 IWETPFTGLRGVVKRGSDIVLALMIQLMLLPVMLVIACGVKLSSPGKIIFAQRRYGLNGE 319 I ETPFTG+ VKR SDI+LA +I LMLLPV++VIA VK +SPG +IF QRRYGL+GE Sbjct: 238 ICETPFTGMNNFVKRVSDILLATVILLMLLPVLVVIAICVKATSPGPVIFKQRRYGLDGE 297 Query: 320 EIVVYKFRSMTVAEDGDKVDQAKKNDVRVTRFGGFLRRTSLDELPQFFNVLQGRMSIVGP 379 EIVVYKFRSMTV EDG V QA K D R+T+ GGFLR++SLDELPQF NVLQGRMSIVGP Sbjct: 298 EIVVYKFRSMTVLEDGANVQQATKGDARLTKIGGFLRKSSLDELPQFVNVLQGRMSIVGP 357 Query: 380 RPHAVAHNELYRKLISGYMLRHKVKPGITGWAQVNGYRGETDTLDKMRSRIAYDLEYLRN 439 RPHAVAHNELYRK I GYMLRHKVKPGITGWAQVNG RGET+TLDKM++RI +DLEYLR Sbjct: 358 RPHAVAHNELYRKQIKGYMLRHKVKPGITGWAQVNGLRGETETLDKMKARIEFDLEYLRR 417 Query: 440 WSLTLDLWIIVRTVKEVLKKDNAY 463 WSLT DLWIIV+TV+ VLK++NAY Sbjct: 418 WSLTFDLWIIVQTVRLVLKRENAY 441 >gi|300312044|ref|YP_003776136.1| lipopolysaccharide synthesis sugar transferase [Herbaspirillum seropedicae SmR1] Length = 461 Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/191 (41%), Positives = 111/191 (58%), Gaps = 3/191 (1%) Query: 268 LRGVVKRGSDIVLALMIQLMLLPVMLVIACGVKLSSPGKIIFAQRRYGLNGEEIVVYKFR 327 LR KR D++ + ++ +L P+ML A + L G +++ Q R G N E +V KFR Sbjct: 268 LRTFFKRSFDLITSCIMLPLLSPLMLGAAICIWLEDRGPVLYRQERVGKNNEHFMVLKFR 327 Query: 328 SMTV-AEDGDKVDQAKKNDVRVTRFGGFLRRTSLDELPQFFNVLQGRMSIVGPRPHAVAH 386 SM V AE A D R+TR G +R+ +DELPQ FNVL+G MS VGPRP Sbjct: 328 SMRVDAEKAGTPQWASSGDPRITRVGNVMRKYRIDELPQLFNVLRGDMSFVGPRPERPYF 387 Query: 387 NELYRKLISGYMLRHKVKPGITGWAQVNGYRGETDTLDKMRSRIAYDLEYLRNWSLTLDL 446 E + + I+ Y +RH VKPGITGWAQV G + D ++ YDL Y++N SL LD+ Sbjct: 388 VEQFAREITFYNVRHCVKPGITGWAQVRYKYGASK--DDAVQKLQYDLYYVKNNSLFLDV 445 Query: 447 WIIVRTVKEVL 457 I++ T+ V+ Sbjct: 446 LILIDTLSVVI 456 >gi|300313506|ref|YP_003777598.1| galactosyltransferase [Herbaspirillum seropedicae SmR1] Length = 186 Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/188 (35%), Positives = 104/188 (55%), Gaps = 7/188 (3%) Query: 272 VKRGSDIVLALMIQLMLLPVMLVIACGVKLSSPGKIIFAQRRYGLNGEEIVVYKFRSMTV 331 +KR D +AL+ ++L ++++ V+L+SPG ++ R G + + KFRSM + Sbjct: 1 MKRLFDFAVALVASVLLAIPIVMVMLAVRLTSPGPALYWSERVGRHNRIFKMPKFRSMRI 60 Query: 332 AEDGDKVDQAKKNDVRVTRFGGFLRRTSLDELPQFFNVLQGRMSIVGPRPHAVAHNELYR 391 + +T G FLR++SLDELPQ +++L+G MS+VGPRP ++L Sbjct: 61 DTPAVATHLLEDPAQWLTPIGSFLRKSSLDELPQLWSILRGDMSLVGPRPALFNQDDLIT 120 Query: 392 KLISGYMLRHKVKPGITGWAQVNGYRGETDTLDKMRSRIAYDLEYLRNWSLTLDLWIIVR 451 S + H++ PG+TGWAQ+NG R E DK+R D EYL+ S DL I+ Sbjct: 121 LRTSQGV--HELVPGLTGWAQING-RDELPIPDKVR----LDAEYLQRRSFLFDLKILWM 173 Query: 452 TVKEVLKK 459 T +VL + Sbjct: 174 TALKVLAR 181 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.142 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,448,935 Number of extensions: 60673 Number of successful extensions: 204 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 199 Number of HSP's successfully gapped: 3 Length of query: 463 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 374 Effective length of database: 1,198,455 Effective search space: 448222170 Effective search space used: 448222170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)