BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0249.p
         (326 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311306|ref|YP_003775398.1| peptidyl/prolyl cis-trans isome...   142   3e-35

>gi|300311306|ref|YP_003775398.1| peptidyl/prolyl cis-trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  142 bits (359), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 158/282 (56%), Gaps = 13/282 (4%)

Query: 28  CGDKEKN-TGKVLARVDGKPITAFQLETELKYAGGAKGMEQHPPVRGQALEALIDRQILL 86
           CG +E+  +G+ LA VDGK IT  QL  EL   GGA+   +      Q L+ L+ RQ+L+
Sbjct: 30  CGKQEQAASGQALASVDGKEITIHQLNAELGK-GGAREANK------QVLDGLVARQVLV 82

Query: 87  DEAMRNKLDRNPKLIQVVNRFKTQAIVQAYLESIEANRVKPSRAEVDAYFKAHPELFANR 146
           + A + KLD +P ++  + R +   + Q+Y++   A   +PS+ EV  ++  HP+ FA R
Sbjct: 83  NAARKEKLDADPAVLADMERARDLVLAQSYVQRKLAKPTRPSQQEVSTFYDQHPDWFAQR 142

Query: 147 KIFNIQQLSIVDRDLSLPLKTMMDSARSLDQIESWLKKHAIAYDKGKLSYTSGELPPDVA 206
           + +   +L I    ++  L  MM   R L+++ +WL+K  I + + +++ TS +LPP + 
Sbjct: 143 QQYEFAELVIDRASVNEELTKMMVGVRPLEEVAAWLQKQHIPFTRLQVTKTSMDLPPPML 202

Query: 207 ERLQKLRHNRFFILKDGQRDRLCMLTEWKDSPVTEEIAYPQIERYLLNKKMQEVSAAEIA 266
             ++K+   + FI+ +G    L  L + ++ P++   A  QIE+YL N++  E++   +A
Sbjct: 203 AGVKKMEKGQLFIVNEGDAAILAALADVRNVPLSRAAATQQIEQYLANQRQGEITEQAVA 262

Query: 267 RLRSAAKIEYVEKPAALIVENTSTLV--MTLPGQPKTAAANA 306
           RL++ AKI Y +  A  + +N+   V   T PG  K AAA A
Sbjct: 263 RLKADAKIVYFDS-AKTLKDNSVAPVADATSPG--KDAAAGA 301


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 924,320
Number of extensions: 35336
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 241
Effective length of database: 1,217,395
Effective search space: 293392195
Effective search space used: 293392195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)