BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0247.p
         (463 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311308|ref|YP_003775400.1| exopolysaccharide biosynthesis ...   422   e-119

>gi|300311308|ref|YP_003775400.1| exopolysaccharide biosynthesis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 466

 Score =  422 bits (1084), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/461 (50%), Positives = 320/461 (69%), Gaps = 7/461 (1%)

Query: 1   MTFFQIRTIVRTRYKLILTTLLIVIAATVAVSLALPKTYRATTSLLLNYKGTDPVSGHVL 60
           M   Q   I+R   K+IL    + + A + VSL LPKTY+AT+S++LNYK TDPV+G ++
Sbjct: 1   MNLSQFLLILRAHLKIILAIFGVTVVAALVVSLVLPKTYKATSSVVLNYKATDPVTGTMV 60

Query: 61  AAQQVSGYMATQMDIVTSRSVALKVVDNLRLADDPNAQQRYQKVANGNVSMRDWLADSLL 120
            AQ + GYM TQ+DI+ SRS AL VVD L+LA DP  ++ Y   +N  + +R+WLA  LL
Sbjct: 61  TAQALPGYMPTQVDIINSRSTALAVVDALKLAQDPAVKESYAN-SNSQLDIRNWLAGILL 119

Query: 121 KMVELAPSRESSVIEISAKGSDPKFVASVANAFAAAYQQINLQIKLAPLQQASQYFSTQV 180
             ++   SR+SSVI+I+ KG DP+ VA++ANAFA AYQQ+++Q+KL P ++AS YF+ Q+
Sbjct: 120 GNLDAQASRDSSVIDITYKGRDPQTVATMANAFAEAYQQVSMQLKLDPTRKASAYFNDQI 179

Query: 181 KTLRSALEQAQNKLSKYQQDHGIVSTDSSVDVATARLNELSTQLVQAQSQAIEASSRGSQ 240
           K LR   EQAQ KLSKYQQ+HGI + D+ VDV   RLN+LSTQLV AQ    EA SR  Q
Sbjct: 180 KVLRENYEQAQAKLSKYQQEHGITNLDNRVDVENNRLNDLSTQLVAAQGALAEAQSR-RQ 238

Query: 241 AMGRDGRDSPDVASNMLIQNLKASLAQAQAKFAMLSQNLDHNHPQYQAAKAEVDRLQAAL 300
           A G   ++SPDV +N L+QNLKA+LA ++A+FA  ++ L   HP Y  AKAEVD L+A L
Sbjct: 239 AAG-SAQNSPDVNANPLVQNLKANLAASEARFAQAAKRLGTQHPDYLNAKAEVDGLRAQL 297

Query: 301 NNSISSTNNSVANNGRILRQREAEIRAALEAQTAKLLQMNRARDELSVLSKDVENAQHAY 360
           N +I++T+ SVA N  IL++REAEIR+   AQ  K+L++NR RDELSVLS+D+++AQ AY
Sbjct: 298 NAAIAATSASVATNASILQKREAEIRSEFNAQKQKVLELNRTRDELSVLSRDLDSAQRAY 357

Query: 361 DAAAQRLAQTDLEGNANQSDVVLLNPAVIPGRPASPNIALNAVLAVLLGATLGLALAILA 420
           +  AQR  QT+LEG +NQSD+ +L  A+ P  P+SP + +N +L++ +G  LG+  A+  
Sbjct: 358 ELTAQRFTQTNLEGQSNQSDISILASAMPPTAPSSPRLFINLILSMFVGLVLGVMAALGL 417

Query: 421 ELTNRRVRSSDDLLTVLQAPVLGAV----AWRKPLRKSGFS 457
           EL NRRVRS  DL+  +  PVLG +    A +   R+ GF 
Sbjct: 418 ELINRRVRSEADLVEGIGLPVLGTISHPAAQKGRDRRLGFG 458


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.126    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,022,734
Number of extensions: 31220
Number of successful extensions: 211
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 2
Length of query: 463
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 374
Effective length of database: 1,198,455
Effective search space: 448222170
Effective search space used: 448222170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)