BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0246.p
         (268 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311309|ref|YP_003775401.1| EPS biosynthesis protein [Herba...   248   3e-67
gi|300312052|ref|YP_003776144.1| chromosome partitioning ATPase ...    56   3e-09

>gi|300311309|ref|YP_003775401.1| EPS biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 293

 Score =  248 bits (633), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 126/271 (46%), Positives = 178/271 (65%), Gaps = 3/271 (1%)

Query: 1   MLVEQGKLTLQQVETVRLMQKREGLRFGEAAKRLGLICEDDIQQVLSRQFDYPYLQDGSG 60
           +L++ GKLT ++ E +  +Q+  G+RFG+AA +LGL+ + DI Q LSRQFDYPYL  G  
Sbjct: 23  ILIDVGKLTPEKAERILRLQRERGMRFGDAAIQLGLLTQADIDQALSRQFDYPYLMKGES 82

Query: 61  NFPSTLIAAYRPFSVEVEELRSIRSQLMSRWFSA--SRKKLAVTSVNSGDGTSLLTANLA 118
                ++AAY PFS +VE LR++RSQLM RWF A    K L +TS   G+G S L ANLA
Sbjct: 83  KVSEAVVAAYNPFSAQVETLRALRSQLMLRWFDADLGHKALTITSPARGEGRSFLAANLA 142

Query: 119 VVFAQLGVQTLVVDANLRAPRQHHIFNLPTESGLADVLAGRSD-LNMIEMIDSFVDLSLL 177
           VVF+QLG +TL++DA++R PRQH +F L   +GL+ V+AGR+     I+ I + +DLS++
Sbjct: 143 VVFSQLGERTLLIDADMRHPRQHELFGLDNRNGLSGVIAGRATAAEAIQRIPALIDLSVM 202

Query: 178 PAGSPAPNPQELLNRASFNAVNQTLCERFDVVLYDTPALLSTGDALAVAARAGGVLLVIR 237
           P G   PNPQELL R  F  + Q L   +DV+L DTPA     D   VA R G  L+V+R
Sbjct: 203 PTGPTPPNPQELLGRQPFAQLLQELAPSYDVILIDTPAGGDCADGQMVAGRTGAALMVVR 262

Query: 238 KDHTRISDLANVSDQLRHSGAEIVGSVMVSF 268
           K+ + +S + +++D+L  +   +VGSV+  F
Sbjct: 263 KNVSHMSAVRSLTDRLADARVMVVGSVLNEF 293


>gi|300312052|ref|YP_003776144.1| chromosome partitioning ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 346

 Score = 55.8 bits (133), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 22/194 (11%)

Query: 78  EELRSIRSQLMSRWFS---ASRKK---LAVTSVNSGDGTSLLTANLAVVFA-QLGVQTLV 130
           E+ R I+  L+ + F+   A  K    + VTS    +G +  + NLA+  A +L    L+
Sbjct: 127 EQFRMIKRSLLRQAFAPREAGSKPGNLIMVTSALPDEGKTFCSINLALSIAMELDHTVLL 186

Query: 131 VDANLRAPRQHHIFNLPTESGLADVLAGRSDL---NMIEMIDSFVD-----LSLLPAGSP 182
           VDA++  P     F+L  + G     AG  +L   + ++M D  +      LS+LP G+ 
Sbjct: 187 VDADVARPSVLRTFDLAEDEG-----AGMMNLLLDDKVDMADVLLKTNVDTLSVLPVGAR 241

Query: 183 APNPQELLNRASFNAVNQTLCERFD--VVLYDTPALLSTGDALAVAARAGGVLLVIRKDH 240
             +  ELL   S   + + +  R+   +V++D+P LL T +A  +A+R G + +V+  + 
Sbjct: 242 HSHSSELLASQSMQLLLEEIANRYPDRIVIFDSPPLLVTSEASVLASRMGQIAVVVAAES 301

Query: 241 TRISDLANVSDQLR 254
           T    + +  +QL+
Sbjct: 302 TSQQAVKSALNQLK 315


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 729,198
Number of extensions: 28129
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,222,130
Effective search space: 224871920
Effective search space used: 224871920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)