BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0238.p
         (498 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311322|ref|YP_003775414.1| O-antigen flippase [Herbaspiril...    97   3e-21
gi|300312066|ref|YP_003776158.1| export protein [Herbaspirillum ...    75   1e-14

>gi|300311322|ref|YP_003775414.1| O-antigen flippase [Herbaspirillum
           seropedicae SmR1]
          Length = 476

 Score = 97.1 bits (240), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 149/345 (43%)

Query: 18  SGSIWSIVDNLAQQVLSFLAFAVLARFLAPDAFGLLTVAHLFILFTRLVVFDAIAMPIVR 77
           S + W  +  + +  L  ++  +L+R LAP  +GLL +A + + F  L+        +++
Sbjct: 6   SNARWLTLSQMVRIALQMVSIFILSRLLAPSEYGLLAMATVAVNFASLLRDMGTGAAVIQ 65

Query: 78  ALAPNDRLYSWVFTCCSIAGLLLTMAMFFSAGLISSLFRTQDLQVVLQGMSISIFFFGLV 137
                    + VF      G+ + + +   + ++   FRT  L  VL  M++S       
Sbjct: 66  KENLTRETTNTVFWLNVGLGVSIALVLIAISPMVEDYFRTPHLAPVLCLMALSFPLTSSC 125

Query: 138 RAYEARLVRNMMFRQLAIRSIASVMIGGVIGIAMAASGAGAISLVVQQVVASGLGLVLVV 197
             + A L R   FR LA   I S  +  V  + +A +G G  SLV Q +V++ L  + + 
Sbjct: 126 AVHSALLERESNFRTLARIEIVSAALALVTAVTLAFTGFGVYSLVWQTLVSAMLSALQLW 185

Query: 198 AQSRWLPTLAFDRALYKKYWDDIRQVGMSGLLNFANANGDSLLVGFLLGPYATGLYNLAK 257
             SRW P   + R+ ++  W     +     +NF   N DS+++G +LG    G+Y  A 
Sbjct: 186 LASRWRPEKIWSRSEFRGLWRFSGNLTGFSFVNFFARNADSMVIGRILGAIPLGIYAQAY 245

Query: 258 RVTSAVYLVITSSMQRVALPMFSDALEDRIELQNRYLKIIGITLFFILPLFCFQGALATP 317
           +V       ++    R   P+ S     R E+   YL+ + +      P+      L  P
Sbjct: 246 KVMMFPLQSMSYVANRALFPVMSRQQGQRAEMARLYLRSLRLIATVTAPMMAGLWLLREP 305

Query: 318 LVQIVFGAKWLPAAPVIGVLALLYMLSSIVQLNDYLFFSLGKNRL 362
            V++  G +W     ++  LA +  L SI+     +F + G+  L
Sbjct: 306 FVRVALGPQWQSVPIILAWLAPVGFLQSIISTTGAVFMATGRTDL 350


>gi|300312066|ref|YP_003776158.1| export protein [Herbaspirillum
           seropedicae SmR1]
          Length = 500

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 103/438 (23%), Positives = 195/438 (44%), Gaps = 25/438 (5%)

Query: 12  MNGNLASGSIWSI----VDNLAQQVLSFLAFAVLARFLAPDAFGLLTVAHLFILFTRLVV 67
           M+ +L S ++ +I    + N   +++S     VLAR L+P  +GL+ +A + I F     
Sbjct: 1   MHNDLRSKTVKAISHVGLGNAVGKLVSLSTTLVLARLLSPAEYGLMEIAMMLIAFIGFFN 60

Query: 68  FDAIAMPIVRALAPNDRLYSWVFTC---CSIAGLLLTMAMFFSAGLISSLFRTQDLQVVL 124
              +   IV+    +    +  F     CS+   LLT+    +AG ++  FR   LQ ++
Sbjct: 61  EIGLTTAIVQRPQLSQEQVNGCFLIAMGCSVVLFLLTL---LAAGPLAGFFRQPQLQPMI 117

Query: 125 QGMSISIFFFGLVRAYEARLVRNMMFRQLAIRSIASVMIGGVIGIAMAASGAGAISLVVQ 184
             +++           EA L + M F+ +A  +I  +++   + + +A +G G  SLV  
Sbjct: 118 STLAVGFIMGAAGSVPEAFLRKQMQFKAMAGITILGIVLQSAVSLGLALAGMGVWSLVWG 177

Query: 185 QVVASGL---GLVLVVAQSRWLPTLAFDRALYKKYWDDIRQVGMSGLLNFANANGDSLLV 241
            +VA+     G  L+   S W P   +      +       V  S +  +  +N D  +V
Sbjct: 178 SLVATATYSGGYFLL---SPWRPRGRYGVREAVELVLFGLHVITSRVFWYLYSNADRAIV 234

Query: 242 GFLLGPYATGLYNLAKRVTSAVYLVITSSMQRVALPMFSDALEDRIELQNRYLKIIGITL 301
           G +LG  + G+Y +A  + +     ITS +  VA P+F+    +   L    + +     
Sbjct: 235 GRVLGAASLGIYGMAFSLATLPSSQITSLVINVAAPLFAKLQHEPARLNAVLVNMTRGIA 294

Query: 302 FFILPLFCFQGALATPLVQIVFGAKWLPAAPVIGVLALLYMLSSIVQLNDYLFFSLGK-N 360
           + + P      A +  L+ +V G +W         L L+ ++ S+  L   +  ++G+  
Sbjct: 295 YVVYPALMGMLACSHELILVVLGPQWEQCQVPFSALCLMGLVKSVDPLLSQVLTAIGQVK 354

Query: 361 RLPVWLSIAQLMLAITSAASVSRFGLVGMSMSFCGAYLVIFP-ISQWLLH---RALGLNS 416
           RL  + ++  + +++  A      GL G+S     A+++++P +S  LLH   R  GL+ 
Sbjct: 355 RLVAYTALCAVTMSLAFAVGAWADGLRGVS----AAWVLVYPLLSVKLLHDVARLTGLSM 410

Query: 417 RMVWFALAPPLVAGVVLL 434
           R  + AL P L   + +L
Sbjct: 411 RGYYRALLPILAGALAML 428


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.141    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,244,385
Number of extensions: 45145
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 2
Length of query: 498
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 409
Effective length of database: 1,198,455
Effective search space: 490168095
Effective search space used: 490168095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 132 (55.5 bits)