BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0237.p
         (257 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311317|ref|YP_003775409.1| UDP-N-acetyl-d-mannosaminuronic...    64   1e-11

>gi|300311317|ref|YP_003775409.1| UDP-N-acetyl-d-mannosaminuronic
           acid transferase [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 99/244 (40%), Gaps = 29/244 (11%)

Query: 17  FPVVKTTSSVLSRYLLRTKCLNKKASLFFANTNFIVQC---HPLREKI--------KSTP 65
            P  + +    +  L R     ++  L   N NF V C      R  +           P
Sbjct: 1   MPFDRVSLGQAAGILQRAASERRRCFLSTPNLNFAVACLDDAAFRHSVIQSDLSIADGMP 60

Query: 66  VVIVNDGVGMDIAAYLFRRQTFKENLNGTDFVPRF----FANAPTPLRVFMLGGRPEMLA 121
           +V +   +G+ I          KE + G+            N   PLRV+  GG P +  
Sbjct: 61  LVWIARALGLPI----------KERVAGSSLFQALREQRMENGQAPLRVYFFGGPPGVAQ 110

Query: 122 KAAVHVRTTLK--QEVVGTCDGYAGMAQ-DRAVLIDSINRARPDVVLVALGNPIQEEWIL 178
            A   +  T    + V     G+  + +      +  IN +R D ++VALG    + WI 
Sbjct: 111 AADEKLNATPSGLRSVGYASPGFGSIEEMSPPQALAHINDSRADFLVVALGAKKGQAWIQ 170

Query: 179 ACRDALNANVVISVGALFDFWSGEKPRAPQLVRRIRLEWLFRLSLEPRRLAQRYTVDIMK 238
                L A VV  +GA+ +F +G   RAP+  ++  LEWL+R+  EP +L +RY  D M 
Sbjct: 171 HNLVQLRAPVVSHLGAVVNFVAGTVSRAPRWAQKTGLEWLWRIKEEP-KLWRRYFDDGMA 229

Query: 239 FLLL 242
            L L
Sbjct: 230 LLRL 233


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 768,269
Number of extensions: 30491
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,226,865
Effective search space: 213474510
Effective search space used: 213474510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)