BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0234.p
         (262 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311318|ref|YP_003775410.1| GDP-mannose pyrophosphorylase [...   370   e-104

>gi|300311318|ref|YP_003775410.1| GDP-mannose pyrophosphorylase
           [Herbaspirillum seropedicae SmR1]
          Length = 471

 Score =  370 bits (951), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/257 (70%), Positives = 211/257 (82%)

Query: 5   RPLIAEHCQRAFNAAYRDLDFYRLDEASFAACPSESTDYAVMEHTRNAAVVPVDIGWNDV 64
           RPLIA   + A   AY DLDF RL EA+F A P+ES DYAVME+TR A VVP DIGW+DV
Sbjct: 214 RPLIAAAVKDAVAKAYTDLDFCRLGEAAFGASPAESIDYAVMENTRRAVVVPADIGWSDV 273

Query: 65  GSWSALWSVMAGDEDGNVLRGDVYTDAVRDSLIRAESRLVAVLGLQDVVVVETKDAVLVA 124
           GSWSAL  VM  D  GNV RGDVY D V +SL+RAESR+VAVLGLQD++VVET DAVLVA
Sbjct: 274 GSWSALQEVMPADAQGNVTRGDVYLDGVSNSLVRAESRMVAVLGLQDLIVVETDDAVLVA 333

Query: 125 HKDQVQHVKKIVGELGRQQRTEHLTHRLVYRPWGSYEAIDMGNRFQVKRITVSPGGKLSL 184
           HKD+ Q VK +V +L  ++R+EH+ H+ VYRPWGSYE++D G+RFQVKRI V PG KLSL
Sbjct: 334 HKDKAQDVKGVVDQLKDKKRSEHIHHKRVYRPWGSYESVDAGDRFQVKRIIVKPGEKLSL 393

Query: 185 QMHHHRAEHWVVVSGTARIVCGDEEKLLTENESTYIPVGVTHRLENPGKLPLHLIEVQSG 244
           QMH+HRAEHWVVVSG+A +  G+E  LL+ENES Y+P+GVTHRLENPGKLPLHLIEVQSG
Sbjct: 394 QMHYHRAEHWVVVSGSALVTRGEEVTLLSENESIYLPIGVTHRLENPGKLPLHLIEVQSG 453

Query: 245 SYLGEDDIVRLDDIYQR 261
           SYLGEDDIVR DD+Y+R
Sbjct: 454 SYLGEDDIVRFDDVYKR 470


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 817,603
Number of extensions: 32360
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 179
Effective length of database: 1,226,865
Effective search space: 219608835
Effective search space used: 219608835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)