BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0232.p
         (192 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309813|ref|YP_003773905.1| phosphomannomutase [Herbaspiril...   164   4e-42

>gi|300309813|ref|YP_003773905.1| phosphomannomutase [Herbaspirillum
           seropedicae SmR1]
          Length = 458

 Score =  164 bits (416), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 80/128 (62%), Positives = 96/128 (75%), Gaps = 4/128 (3%)

Query: 4   QGESQVVVGRDGRLSGPELSAALMAGLQDAGIDVIDLGVVVTPMVYFATCVLGAQSGIMV 63
           +G+ +VV+GRDGRLSGPEL+A L  GLQ  G+DVIDLG+V TPMVYF T VL  QSGIMV
Sbjct: 41  KGQKKVVIGRDGRLSGPELAAELARGLQAVGVDVIDLGMVATPMVYFGTHVLDTQSGIMV 100

Query: 64  TGSHNPPDYNGFKMVLAGEAIYGDAIQQLYQAISSGRVQDALASPSGSYRQHDIRHAYLQ 123
           TGSHNPPDYNGFKMVLAGEAI+G+ IQ LY AI  G         +G Y  HDI+ AY++
Sbjct: 101 TGSHNPPDYNGFKMVLAGEAIHGETIQALYHAIVKGDFPQG----AGGYATHDIKAAYIE 156

Query: 124 RIIGDADI 131
           R++ D  +
Sbjct: 157 RMLADVKL 164


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 597,154
Number of extensions: 25386
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 192
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,241,070
Effective search space: 138999840
Effective search space used: 138999840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)