BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0224.p
         (218 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313919|ref|YP_003778011.1| acyl CoA:acetate/3-ketoacid CoA...   313   6e-87
gi|300313288|ref|YP_003777380.1| 3-oxoadipate CoA-transferase su...   192   1e-50

>gi|300313919|ref|YP_003778011.1| acyl CoA:acetate/3-ketoacid CoA
           transferase subunit beta [Herbaspirillum seropedicae
           SmR1]
          Length = 216

 Score =  313 bits (803), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 173/194 (89%), Positives = 179/194 (92%), Gaps = 3/194 (1%)

Query: 26  YVNLGIGLPTLVANHVPKDIEVWLQSENGLLGIGPFPTXDA---DLINAGKQTVTTIPGS 82
           YVNLGIGLPTLVANHVP DIEVWLQSENGLLGIGPFPT D    DLINAGKQTVTTIPGS
Sbjct: 21  YVNLGIGLPTLVANHVPSDIEVWLQSENGLLGIGPFPTEDQVDPDLINAGKQTVTTIPGS 80

Query: 83  SFFASADSFGMIRGGKINIAILGAMQVSQQGDLANWMIPGKMVKGMGGAMDLVAGVGRVV 142
           SFF+SADSFGMIRGGKINIAILGAMQVS +GDLANWMIPGKMVKGMGGAMDLVAGVGRVV
Sbjct: 81  SFFSSADSFGMIRGGKINIAILGAMQVSAKGDLANWMIPGKMVKGMGGAMDLVAGVGRVV 140

Query: 143 VLMEHVAKGKDGSISQKILKQCNLPLTGVGVVNRIITDLGVIDVTPQGLKLIELATGVSK 202
           VLMEHVAK KDGS S+KIL  CNLPLTGVGVVNRIITDLGVIDVTP GLKLIELA+GV+K
Sbjct: 141 VLMEHVAKAKDGSTSKKILNDCNLPLTGVGVVNRIITDLGVIDVTPGGLKLIELASGVTK 200

Query: 203 EDVIANTEAELDVS 216
           E+VI  TEA LDVS
Sbjct: 201 EEVIEKTEAPLDVS 214


>gi|300313288|ref|YP_003777380.1| 3-oxoadipate CoA-transferase
           subunit B [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  192 bits (489), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 101/196 (51%), Positives = 134/196 (68%), Gaps = 8/196 (4%)

Query: 26  YVNLGIGLPTLVANHVPKDIEVWLQSENGLLGIGPFPT---XDADLINAGKQTVTTIPGS 82
           YVNLGIGLPT VAN++P D E++L SENG+LG+GP P     D DLINAGKQ VT + G 
Sbjct: 22  YVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAPGEEDEDLINAGKQPVTLLTGG 81

Query: 83  SFFASADSFGMIRGGKINIAILGAMQVSQQGDLANWMIPG-KMVKGMGGAMDLVAGVGRV 141
           ++F  ADSF M+RGG ++I +LGA QVS +GDLANW       +  +GGAMDL  G  +V
Sbjct: 82  AYFHHADSFAMMRGGHLDICVLGAFQVSAKGDLANWHTGAPDAIPAVGGAMDLAIGAKQV 141

Query: 142 VVLMEHVAKGKDGSISQKILKQCNLPLTGVGVVNRIITDLGVIDVTPQGLKLIELATGVS 201
            V+M+H  K    +   K+++ C+ PLTG+G VNRI TDL VIDVTP GL++ E+  G+S
Sbjct: 142 FVMMDHQTK----TGESKLVEACSYPLTGIGCVNRIYTDLAVIDVTPHGLQVREIVEGLS 197

Query: 202 KEDVIANTEAELDVSA 217
            +++   T A L  +A
Sbjct: 198 FDELQKLTGAPLRPAA 213


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 716,884
Number of extensions: 30457
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 218
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,231,600
Effective search space: 167497600
Effective search space used: 167497600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)