BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0223.p
         (234 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313920|ref|YP_003778012.1| acyl CoA:acetate/3-ketoacid CoA...   426   e-120
gi|300313289|ref|YP_003777381.1| 3-oxoadipate CoA-transferase su...   219   1e-58

>gi|300313920|ref|YP_003778012.1| acyl CoA:acetate/3-ketoacid CoA
           transferase subunit alpha [Herbaspirillum seropedicae
           SmR1]
          Length = 231

 Score =  426 bits (1094), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/231 (95%), Positives = 227/231 (98%)

Query: 1   VNKVYPDASSALSDIVKDGQTIAVGGFGLCGIPEALIAALRDSGVQNLTAISNNAGVDGF 60
           +NKVYPDA++AL DIVKDGQTIAVGGFGLCGIPEALIAALRDSGVQNLTAISNNAGVDGF
Sbjct: 1   MNKVYPDAATALKDIVKDGQTIAVGGFGLCGIPEALIAALRDSGVQNLTAISNNAGVDGF 60

Query: 61  GLGQLLTTRQIKKMIASYVGENKEFERQYLAGELELEFTPQGTLAEKLRAGGAGIPAFFT 120
           GLGQLLTTRQIKKMIASYVGENKEFERQYLAGELELEFTPQGTLAEKLRAGGAGIPAFFT
Sbjct: 61  GLGQLLTTRQIKKMIASYVGENKEFERQYLAGELELEFTPQGTLAEKLRAGGAGIPAFFT 120

Query: 121 KTGVGTLVAEGKEIREFDGAKYVMERSLVADVSLVKAHKADKAGNLVFNKTARNFNPNVA 180
           KTGVGTLVAEGKE+REFDG +YVMERSLVADVSLVKAHKADKAGNLVFNKTARNFNPNVA
Sbjct: 121 KTGVGTLVAEGKEVREFDGERYVMERSLVADVSLVKAHKADKAGNLVFNKTARNFNPNVA 180

Query: 181 MAGKITVVEVEELVEVGELDPDQIHTAGIFVHRIVVNATPEKRIEQRTVSA 231
           MAGK+TVVEVEELVEVG+LDPDQIHT GIFVHRIVVNATPEKRIEQRTV A
Sbjct: 181 MAGKVTVVEVEELVEVGQLDPDQIHTPGIFVHRIVVNATPEKRIEQRTVRA 231


>gi|300313289|ref|YP_003777381.1| 3-oxoadipate CoA-transferase
           subunit A [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  219 bits (558), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/217 (51%), Positives = 153/217 (70%), Gaps = 3/217 (1%)

Query: 1   VNKVYPDASSALSDIVKDGQTIAVGGFGLCGIPEALIAALRDSGVQNLTAISNNAGVDGF 60
           +NK+      A++DI  DG TI +GGFG  G+P ALI AL   G ++LT ++NNAG    
Sbjct: 2   INKISDSLEQAVADI-HDGATIMIGGFGNAGMPSALIDALIAQGARDLTIVNNNAGNGET 60

Query: 61  GLGQLLTTRQIKKMIASYV--GENKEFERQYLAGELELEFTPQGTLAEKLRAGGAGIPAF 118
           GL  LL T+++KK++ S+    +++ F+  Y +GE+ELE TPQG LAE++RA GAGI  F
Sbjct: 61  GLAALLKTKRVKKIVCSFPRQSDSQVFDALYRSGEIELELTPQGNLAERIRAAGAGIGGF 120

Query: 119 FTKTGVGTLVAEGKEIREFDGAKYVMERSLVADVSLVKAHKADKAGNLVFNKTARNFNPN 178
           F+ TG GT++AEGKE RE +G  YV+E  + AD +L+KA + D+ GNLV+ KTARNF P 
Sbjct: 121 FSPTGYGTMLAEGKETREINGRHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPI 180

Query: 179 VAMAGKITVVEVEELVEVGELDPDQIHTAGIFVHRIV 215
           +AMA K T+ +V E+VE+G+LDP+ I T GIFV RIV
Sbjct: 181 MAMAAKCTIAQVSEVVELGQLDPENIVTPGIFVQRIV 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 677,157
Number of extensions: 26717
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 2
Length of query: 234
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,231,600
Effective search space: 187203200
Effective search space used: 187203200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)