BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0217.p
         (212 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313924|ref|YP_003778016.1| protein-disulfide isomerase [He...   248   3e-67

>gi|300313924|ref|YP_003778016.1| protein-disulfide isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score =  248 bits (633), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 120/205 (58%), Positives = 150/205 (73%), Gaps = 2/205 (0%)

Query: 4   TTLHYIYDPLCGWCYGAAPLAEAARRVLPVIGHGGGMMTGANRKQVSPALRNYVMPHDHR 63
           T LHYI+DPLCGWCYGAAPL  AAR+VLPV  HGGGMM G NR++V   LR+YVMPHDHR
Sbjct: 10  TVLHYIHDPLCGWCYGAAPLVAAARQVLPVQAHGGGMMAGRNRRRVDAQLRDYVMPHDHR 69

Query: 64  IAELSGQPFGDDYFNGLLLDETAVFDSAPPIAAILAADDIAGR--GLDLLSRLQKAHYIE 121
           IA+++GQ FG+ YF+GLL D  AVFDSAPP AA+LA   + G   GLD+L+ +Q+AHY +
Sbjct: 70  IAQMTGQVFGEPYFHGLLKDTDAVFDSAPPTAAVLAVQALRGEAAGLDMLAAIQRAHYQQ 129

Query: 122 GKRIADTDVLRALAVEVGLDGEAFAQAHARISKEELQPHIAASRRFLAQVGGHGFPTFVL 181
           G+RI++   L  LA  +G++  AF+    RI +EEL  HI ASR  L  VGG GFPTFVL
Sbjct: 130 GRRISEPATLIELAQALGIEAAAFSAELQRIEQEELADHIEASRELLNYVGGRGFPTFVL 189

Query: 182 EQEGRFEVLDTGRWLGKADAWRAHL 206
           ++    EVLDTGRWLG+ + W  +L
Sbjct: 190 QRGDTLEVLDTGRWLGQPEQWANYL 214


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 703,169
Number of extensions: 29120
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,236,335
Effective search space: 161959885
Effective search space used: 161959885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)