BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0216.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313927|ref|YP_003778019.1| HAD (haloacid dehalogenase) hyd...   308   2e-85

>gi|300313927|ref|YP_003778019.1| HAD (haloacid dehalogenase)
           hydrolase superfamily protein [Herbaspirillum
           seropedicae SmR1]
          Length = 213

 Score =  308 bits (789), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 140/211 (66%), Positives = 170/211 (80%)

Query: 9   YASSAGIRAVVFDFGGVLFDWNPLHLYQDLIPDAAEREHFLTHVCSPDWNIRQDGGRTLK 68
           +++ + IRAVVFDFGGVLFDWNP +LY+ LI D  +R HFLTH+CSP+WN++QDGGR+L 
Sbjct: 3   FSAPSPIRAVVFDFGGVLFDWNPQYLYRQLIADEQQRNHFLTHICSPEWNVQQDGGRSLA 62

Query: 69  EGTELLLAEHPQHAPMIRAFYDRWTEMLRGPLHDGVELLRTLHDKDVPLFGLTNWSSETF 128
           E T  L+ +HPQH  +IRAFYDRW EMLRGPL +GV LLR LH + VPLFGLTNWS+ET+
Sbjct: 63  EATAHLIQQHPQHETLIRAFYDRWVEMLRGPLPEGVALLRELHAQQVPLFGLTNWSAETY 122

Query: 129 PYALANYDFLQIFRDIVVSGTEQCIKPDDVIYQIALTRYGKHLPNLKPSELVFLDDSAKN 188
           P+A  N+DF+Q+FRDIVVSG E+CIKP+  IYQIAL RY +HLP LKP ELVF+DD+ KN
Sbjct: 123 PHARDNHDFMQLFRDIVVSGHERCIKPEPRIYQIALERYARHLPGLKPEELVFIDDAEKN 182

Query: 189 VEAARRLGWHAIHHVDCAETVKQLRELGLPV 219
           + A R LGW  +HHVD A T  QLR LGLPV
Sbjct: 183 IHACRALGWQGVHHVDAAGTRAQLRALGLPV 213


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.140    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 745,618
Number of extensions: 31485
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)