BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0215.p (518 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 766 0.0 gi|300311134|ref|YP_003775226.1| transcription regulator protein... 316 3e-87 gi|300312337|ref|YP_003776429.1| transcription regulator protein... 304 1e-83 gi|300312133|ref|YP_003776225.1| transcription regulator protein... 252 6e-68 gi|300310416|ref|YP_003774508.1| MocR family transcription regul... 134 2e-32 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/489 (76%), Positives = 414/489 (84%), Gaps = 17/489 (3%) Query: 30 MAKAQREAVYLTLERSGAKGGSRSGSNRLVEQVVNGLAQLIEQGALRSGERLPSVRQFAE 89 MAK R + L L+R S RLVEQV NGLA LIE G LRSGERLPSVRQFA+ Sbjct: 1 MAKPARAPLQLDLKRKT--------SARLVEQVANGLAGLIETGELRSGERLPSVRQFAQ 52 Query: 90 SHAIGASTVVEAYEQLVARGLLIVRRGAGFFIAPKGANPPPAMAFTPPDPVIDSAWLLSE 149 H IG+STVVEAYEQLVARG+L RRGAGFF+A + F PP+PVIDSAWLLSE Sbjct: 53 HHDIGSSTVVEAYEQLVARGMLQARRGAGFFVAARAGQSGQHAVFVPPEPVIDSAWLLSE 112 Query: 150 MFADERVPIKAGCGWLPGKWLDDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQIICQF 209 MFADERVPIKAGCGWLPGKWL+DEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQ+I QF Sbjct: 113 MFADERVPIKAGCGWLPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQF 172 Query: 210 LANWSLEVSLDQVLTSHGATQGLDLIIRTMVKRGETVFVDDPGYCNLIAMLRMADLNVIG 269 L +WSLE+ ++QVLT+HGATQ LDL+IRTM + G+TV +DDPGYCNLIAMLR+A LNVIG Sbjct: 173 LGHWSLELGIEQVLTTHGATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAGLNVIG 232 Query: 270 IPRTPTGVDTERLETLARTHKPKLFFTTSVLHNPTGTSYTPACAMRVLQAAERHGFWVVE 329 +PRTP GVDT+ LETLARTH PK+FFTTSVL NPTGTSYTPACAMRVLQAAERHGFWVVE Sbjct: 233 VPRTPGGVDTDVLETLARTHHPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVE 292 Query: 330 DDIFRELGQPTDPMLAALDGLQRVIYVGSYSKTIAPSLRLGFIACQRDLARQLVHTKMVL 389 DDIFRELGQ TDPMLAALDGLQRVIYVGSYSKTIAPSLR+G+IACQR+LARQ+VHTKMVL Sbjct: 293 DDIFRELGQATDPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVL 352 Query: 390 SLTNSEINERLVHSVLTEGHHRRHVENLAASLLNAQSRVNGKLSESGLTPFTTPPPPPPP 449 +LTNSEINERLVH+VLTEGHHRRHV+ L A+LL+AQ+ +N KLSE GLTPFT Sbjct: 353 TLTNSEINERLVHNVLTEGHHRRHVQTLNATLLSAQATLNAKLSEVGLTPFTA------- 405 Query: 450 PXPRGGMFSWARLDGCELNAREIADRARQKGIWLAPGEFFHLTPPDEPWFRFNVAYADAA 509 RGGMFSWA ++GCEL+AREIADRARQKGIWLAPG+FFHL+ P + FRFNV YAD Sbjct: 406 --ARGGMFSWATIEGCELSAREIADRARQKGIWLAPGDFFHLSAPHQTSFRFNVGYADVP 463 Query: 510 ELYEFFRTL 518 EL++F R L Sbjct: 464 ELFDFLRGL 472 >gi|300311134|ref|YP_003775226.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 500 Score = 316 bits (809), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 189/473 (39%), Positives = 263/473 (55%), Gaps = 21/473 (4%) Query: 52 RSGSNRLVEQVVNGLAQLIEQGALRSGERLPSVRQFAESHAIGASTVVEAYEQLVARGLL 111 R + LVEQ+V G+ I+ LRSG R+PS+RQFA+++ I TVVEAY++LVA+G L Sbjct: 34 RESGDSLVEQIVRGIRARIDDKLLRSGMRMPSIRQFADTNQISRFTVVEAYDRLVAQGYL 93 Query: 112 IVRRGAGFFI---APKGANPPPAMAF--TPPDPVIDSAWLLSEMFADERVPIKAGCGWLP 166 RRG+GF++ AP G + A A T P +D WL+ MF G G LP Sbjct: 94 ESRRGSGFYVKERAPLGGSYGAAQAELDTEPGRGLDVVWLVRNMFRQMPPAKMPGGGLLP 153 Query: 167 GKWLDDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQIICQFLANWSLEVSLDQVLTSH 226 WLD E + A R + R +GYG P G+ PLRQ + LA + + +Q++ + Sbjct: 154 PDWLDGELIANALRAVSRDNPQLLLGYGTPQGFLPLRQQLQLKLAELEIAAAPEQIVLTT 213 Query: 227 GATQGLDLIIRTMVKRGETVFVDDPGYCNLIAMLRMADLNVIGIPRTPTGVDTERLETLA 286 G TQGLD + R ++ G+ +FVDDP + + V+GIPR G D RL LA Sbjct: 214 GVTQGLDTVARHFLRPGDVIFVDDPAWFLMFGSFAALGAKVVGIPRLGDGPDIARLRELA 273 Query: 287 RTHKPKLFFTTSVLHNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFREL--GQPTDPM- 343 HKPKL+ SVLHNPT TS + A A +VL+ AE H F +VEDDI+ ++ G P Sbjct: 274 AVHKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFVIVEDDIYCDMHPGSAVQPAT 333 Query: 344 -LAALDGLQRVIYVGSYSKTIAPSLRLGFIACQRDLARQLVHTKMVLSLTNSEINERLVH 402 +AALD LQRVIY+G +SKT++ +LR+G+IA +LAR L K++ +LT EI ER+ + Sbjct: 334 RIAALDQLQRVIYLGGFSKTLSANLRVGYIATSAELARSLADRKLLSTLTTGEIGERVAY 393 Query: 403 SVLTEGHHRRHVENLAASLLNAQSRVNGKLSESGLTPFTTPPPPPPPPXPRGGMFSWARL 462 VL+EGH+R+H E + A L A+ +V +L G+ PP GMF W Sbjct: 394 KVLSEGHYRKHAERVRARLNGARDKVMRQLERLGMDVVEAPP---------CGMFLWVD- 443 Query: 463 DGCELNAREIADRARQKGIWLAPGEFFHLTPPDEPWFRFNVAYADAAELYEFF 515 G + N + + A Q+G LAPG F + R NVA ++ F Sbjct: 444 TGRDTNV--MTEAAMQEGFLLAPGSLFSPAQLPSTYMRINVASMADPGIWRFL 494 >gi|300312337|ref|YP_003776429.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 469 Score = 304 bits (778), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 174/468 (37%), Positives = 252/468 (53%), Gaps = 34/468 (7%) Query: 54 GSNRLVEQVVNGLAQLIEQGALRSGERLPSVRQFAESHAIGASTVVEAYEQLVARGLLIV 113 S L +V + + I +G G RLPS+R+ A H +T+V +++L A GL Sbjct: 4 ASTTLTSTLVQLIRRQIAEGVYAPGSRLPSIREMAARHGCAKNTIVNVFDELTALGLAEP 63 Query: 114 RRGAGFFIAPKGANPPPAMAFTPPDP----------VIDSAWLLSEMFADERVPIKAGCG 163 RRGAGFF+ PP P +D WL+ E + ++ G G Sbjct: 64 RRGAGFFVC-----------VAPPRPKEDEEGNLSRAMDVVWLMREQLKHDPGQLRLGDG 112 Query: 164 WLPGKWLDDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQIICQFLANWSLEVSLDQVL 223 + P +WL D L + ++++R+ GYG +GY PLRQ + LA +E Q++ Sbjct: 113 FPPVEWLHDVRLDKFHQKVVRTGIGALFGYGSRFGYLPLRQHLVHKLAQHGIEAGTGQIV 172 Query: 224 TSHGATQGLDLIIRTMVKRGETVFVDDPGYCNLIAMLRMADLNVIGIPRTPTGVDTERLE 283 +HGA Q LD++IR ++ G+ V VD+PGY L L+++ +IGIPR P G D LE Sbjct: 173 LTHGANQALDIVIRHFIRPGDRVLVDEPGYYMLYGKLKLSGARIIGIPRLPDGPDVAVLE 232 Query: 284 -TLARTHKPKLFFTTSVLHNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFRELGQPTDP 342 L R KP LFFT S+ HNPT + +P A R+LQ A+R+ +VE+D F + T P Sbjct: 233 RELHRPGKPPLFFTQSLAHNPTASDTSPHKAHRILQLADRYQAIIVENDAFADFKPATAP 292 Query: 343 MLAALDGLQRVIYVGSYSKTIAPSLRLGFIACQRDLARQLVHTKMVLSLTNSEINERLVH 402 +A LD L+R +YVGS+SK+++ +LR+GFIAC RDLA L KM++ +++SE ER + Sbjct: 293 RIATLDQLRRTVYVGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHMSSSEYCERTLD 352 Query: 403 SVLTEGHHRRHVENLAASLLNAQSRVNGKLSESGLTPFTTPPPPPPPPXPRGGMFSWARL 462 +L++GH RH L L A + +L G F P+ M+ WAR Sbjct: 353 VILSDGHFSRHTARLRERLAQATEQARAQLEGLGAELFCA---------PQQAMYLWARF 403 Query: 463 DGCELNAREIADRARQKGIWLAPGEFFHL-TPPDEPWFRFNVA-YADA 508 E +A+ +A R Q+ I LAPG FH+ T +PW RFNV ADA Sbjct: 404 PWFE-DAKRLAQRLMQRQIVLAPGSIFHVDTEQTQPWSRFNVGLLADA 450 >gi|300312133|ref|YP_003776225.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 491 Score = 252 bits (643), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 162/465 (34%), Positives = 243/465 (52%), Gaps = 21/465 (4%) Query: 50 GSRSGSNRLVEQVVNGLAQLIEQGALRSGERLPSVRQFAESHAIGASTVVEAYEQLVARG 109 G + + LV+++ + + + L G++LPS+R AES + TV AYE+LVA G Sbjct: 24 GDKHSARLLVDRIFTAVLEGVRTRRLAHGDKLPSLRVVAESAQVSRDTVARAYEKLVAHG 83 Query: 110 LLIVRRGAGFFIAPKGANPPPAMAFTPPDPVIDSAWLLSEMFADERVPIKAGCGW--LPG 167 + R GAGFF+ A T P P++ + W + D R + G G LP Sbjct: 84 HVYTRPGAGFFVRVDN-QVANAQTQTAPAPLLTN-W--RQRLLDPRTLLHRGLGSGDLPA 139 Query: 168 KWLDDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQIICQFLANWSLEVSLDQVLTSHG 227 +W++ L A R + RS GYG GY PLRQ + + LA+ ++V+ QVLT+ G Sbjct: 140 EWINVPQLAAALRAVSRSNINWAAGYGDAQGYLPLRQQLQRKLADIGVDVTPPQVLTTLG 199 Query: 228 ATQGLDLIIRTMVKR-GETVFVDDPGYCNLIAMLRMADLNVIGIPRTPTGVDTERLETLA 286 AT ++LI+ + +++ G TV VDDPG L+ L + ++++G+ R G D L+ Sbjct: 200 ATDAINLIVMSYLRQPGMTVLVDDPGSFLLMERLLASGMHIVGVARDADGPDITALQNAC 259 Query: 287 RTHKPKLFFTTSVLHNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFRELG----QPTDP 342 H P +F S+LH+P T +P A ++L+ AER F +VEDD + +L P Sbjct: 260 EQHGPTFYFCQSLLHSPGYTGLSPQRAFQILRLAERFNFTIVEDDTYGDLAPAHRSPHAT 319 Query: 343 MLAALDGLQRVIYVGSYSKTIAPSLRLGFIACQRDLARQLVHTKMVLSLTNSEINERLVH 402 LA+LD LQ V+YVGS+SKT+ +R GFIA L+ K+V +N + ER ++ Sbjct: 320 RLASLDQLQHVLYVGSFSKTLGAGMRAGFIAGNPQQIEWLLLYKLVSRASNGSLAERAIY 379 Query: 403 SVLTEGHHRRHVENLAASLLNAQSRVNGKLSESGLTPFTTPPPPPPPPXPRGGMFSWARL 462 +L+EG +RRH E L L A+ R+ L G+ P P G++ W +L Sbjct: 380 RLLSEGGYRRHCEQLRTRLDQARPRLMAALEALGIV---------LPHRPDAGLYLWGKL 430 Query: 463 DGCELNAREIADRARQKGIWLAPGEFFHLTPPDEPWFRFNVAYAD 507 G +LNA E+A+R G APG F + RFNVA +D Sbjct: 431 PG-DLNAMEVAERMLANGYLTAPGPVFSSGQAARSYMRFNVASSD 474 >gi|300310416|ref|YP_003774508.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 116/392 (29%), Positives = 183/392 (46%), Gaps = 28/392 (7%) Query: 43 ERSGAKGGSRSGSNRLVEQVVNGLAQLIEQGALRSGERLPSVRQFAESHAIGASTVVEAY 102 E AK R+ NR + Q++ + I L +G +LPS R A +TV AY Sbjct: 33 ESGAAKPAPRTPVNRQIYQLIR---EAILAHTLPAGMQLPSSRDLALELGSSRNTVTYAY 89 Query: 103 EQLVARGLLIVRRGAGFFIAPKGANPPPAMAFTPPDPVIDSAWLLSEMFA-DERVPIKAG 161 EQL+A G L R GAG F+A + P A P+P+ D + SE+ A + +AG Sbjct: 90 EQLLAEGYLESRPGAGTFVADTAPDQIPE-AVERPEPLTDPSG-KSELSARGAMLTRQAG 147 Query: 162 CG------WLPG----KWLDDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQIICQFL- 210 G ++PG + + + + + R A + YG GYA LR+ I ++L Sbjct: 148 VGERQWGAFMPGVPDVTCVPYKIWGRLQNKHWRRSNADLLTYGPGAGYAGLREQIAEYLR 207 Query: 211 ANWSLEVSLDQVLTSHGATQGLDLIIRTMVKRGETVFVDDPGYCNLIAMLRMADLNVIGI 270 S+ + QVL + G Q LD++++ + + G++ +V+DP Y ++ LN +GI Sbjct: 208 VARSVNCTPSQVLITTGIHQSLDIVVKLLGEHGDSAWVEDPCYWGTRSV-----LNSLGI 262 Query: 271 PRTPTGVDTERLET-LARTHKPKLFFTTSVLHN-PTGTSYTPACAMRVLQAAERHGFWVV 328 P VD E + LA +P F T+ H P G + + +L+ A H W++ Sbjct: 263 QSVPIAVDQEGMRMRLANLRRPPRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWII 322 Query: 329 EDDI---FRELGQPTDPMLAALDGLQRVIYVGSYSKTIAPSLRLGFIACQRDLARQLVHT 385 EDD FR G+P L +D RV+Y+G++SK + P LR+GF+ LAR Sbjct: 323 EDDYDSEFRYGGRPLAS-LQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLARAFSTG 381 Query: 386 KMVLSLTNSEINERLVHSVLTEGHHRRHVENL 417 L + + + EGH H+ + Sbjct: 382 IAELYRNGQVFLQATLADFMAEGHFASHIRKM 413 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,556,242 Number of extensions: 61709 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 199 Number of HSP's successfully gapped: 11 Length of query: 518 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 429 Effective length of database: 1,198,455 Effective search space: 514137195 Effective search space used: 514137195 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)