BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0211.p (398 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313931|ref|YP_003778023.1| branched-chain amino acid ABC t... 761 0.0 gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC t... 102 4e-23 gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC t... 100 2e-22 gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC t... 97 3e-21 gi|300314071|ref|YP_003778163.1| amino acid ABC transporter peri... 91 2e-19 >gi|300313931|ref|YP_003778023.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 397 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/397 (91%), Positives = 381/397 (95%) Query: 1 MMKRRDFLKLSALAAPGALSYTDVFAQADAIQFGCPVPMSGPFAANGKYADMGMKLVLQK 60 M+ RR FLKLSALAAPGALSY DVFAQA++I FGCPVPMSGPFAANGK+AD+GMKL LQK Sbjct: 1 MISRRHFLKLSALAAPGALSYHDVFAQAESIAFGCPVPMSGPFAANGKFADLGMKLALQK 60 Query: 61 YGKVLGKNLSYTTLDTEGKPATAVRKVQETMEKGTRFFAGGILSGEALAMGKEAEKGGSI 120 YGKVLGK+ SY LDTEGKPATAVRK+QE++EKGTRFFAGGILSGEALAMGKEA+K G++ Sbjct: 61 YGKVLGKSTSYVNLDTEGKPATAVRKMQESIEKGTRFFAGGILSGEALAMGKEADKAGAV 120 Query: 121 FITTAGADEITGSDCNRATFRWSVPTFGAIEQTVRPLLEKMPNAKRWYTITPQYVFGDGL 180 FITTAGADEITGSDCNRATFRWSVPTFGAIEQTVRPLLEKMPNAKRWYTITPQYVFG+GL Sbjct: 121 FITTAGADEITGSDCNRATFRWSVPTFGAIEQTVRPLLEKMPNAKRWYTITPQYVFGEGL 180 Query: 181 LSAAKAIFKEKGIEHVGNSYHSLAEKEFSGYLTNAMAAKPDVLLLLNFGSQSSDTLRQAV 240 LSAAK IFKEKGIEHVGNSYHSL EKEFSGYLTNA+AAKPDVLLLLNFGSQSSDTLRQAV Sbjct: 181 LSAAKNIFKEKGIEHVGNSYHSLTEKEFSGYLTNAIAAKPDVLLLLNFGSQSSDTLRQAV 240 Query: 241 SFGMKNNCTILMAWASGLEQFETLGADICDGVYFGAQYWHAIDAPFNKEFVKTVNDALKI 300 SFGMKNNCTILMAWASGLEQFETLGADICDGVYFGAQYWHAIDAPFNKEFVK VND LKI Sbjct: 241 SFGMKNNCTILMAWASGLEQFETLGADICDGVYFGAQYWHAIDAPFNKEFVKLVNDNLKI 300 Query: 301 DPNYSLAGSYICTKIVLDAIIKANSTDPKAVIAAMEGMKYEGLTGTEEIRKGDHQVIKNY 360 DPNYSLAGSYICTKI+LDAIIKANSTDPKAVIAAMEGMKYEGLTG+EEIRKGDHQVIKNY Sbjct: 301 DPNYSLAGSYICTKIILDAIIKANSTDPKAVIAAMEGMKYEGLTGSEEIRKGDHQVIKNY 360 Query: 361 YLLKGKAKSKMRNKNDYADIISSGKSFLALDKTMCKL 397 YLLKGKAK+KM NKNDYADI+SSGKSFL L+KT CKL Sbjct: 361 YLLKGKAKAKMANKNDYADIVSSGKSFLPLEKTQCKL 397 >gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 89/376 (23%), Positives = 165/376 (43%), Gaps = 12/376 (3%) Query: 29 DAIQFGCPVPMSGPFA-ANGKYADMGMKLVLQKYG-KVLGKNLSYTTLDTEGKPATAVRK 86 DA++ G MSGP+A +G +++ + +G VLGK + + D + K A + Sbjct: 31 DAVRIGFITDMSGPYADTDGLGGLEAIRMAVADFGGTVLGKPIEVISADHQNKADIAATR 90 Query: 87 VQE-TMEKGTRFFAGGILSGEALAMGKEAEKGGSIFITT-AGADEITGSDCNRATFRWSV 144 +E E+G GG+ S AL+M K + ++I AG +T +C T + Sbjct: 91 AREWADERGLDMLIGGVNSATALSMNKVMAEKKRVYINIGAGTARLTNEECTPYTVHYEY 150 Query: 145 PTFGAIEQTVRPLLEKMPNAKRWYTITPQYVFGDGLLSAAKAIFKEKGIEHVGNSYHSLA 204 T + T ++++ K W+ + Y FG L + A+ K G VG+ H Sbjct: 151 DTVALAKGTASAVIKQ--GGKSWFFLVADYAFGHSLANDTSAVVKASGGTVVGSIKHPPQ 208 Query: 205 EKEFSGYLTNAMAAKPDVLLLLNFGSQSSDTLRQAVSFGMKNNCTILMAWASGLEQFETL 264 + S +L A A+K +L L N G + ++++ A FG+ L+ + L Sbjct: 209 SSDLSSFLLQAQASKAQILGLANAGEDTVNSIKAAKEFGVTKTMK-LVGLLMVINDIHAL 267 Query: 265 GADICDGVYFGAQYWHAIDAPFNKEFVKTVNDALKIDPNYSLAGSYICTKIVLDAIIKAN 324 G +G+ ++ D P +++F + +K P+ A +Y T L A+ Sbjct: 268 GLANAEGLMMTDSWYWDKDEP-SRKFAERFFQKMKKMPSTHQAAAYSATTTYLKAVQAIG 326 Query: 325 STDPKAVIAAMEGMKYEGLTGTEEIRKGDHQVIKNYYLLKGKAKSKMRNKNDY---ADII 381 + D V+A ++ + + IR D + I + YL + K+ ++ + DY + I Sbjct: 327 TDDSTKVMAQLKKTRIDDFYNKGSIR-ADGRNIHDMYLYQVKSPAESKKPWDYLKLLETI 385 Query: 382 SSGKSFLALDKTMCKL 397 ++F ++ + C L Sbjct: 386 PGEQAFTSVADSKCSL 401 >gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 103/392 (26%), Positives = 168/392 (42%), Gaps = 24/392 (6%) Query: 4 RRDFLKLSALAAPGALSYTDVFAQADAIQFGCPVPMSGPFAA-NGKYADMGMKLVLQKYG 62 RR L +A A GA A D I+ G MSG +A +G+ +++ + G Sbjct: 6 RRAALSATACALLGAAILPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMAIADAG 65 Query: 63 KVL-GKNLSYTTLDTEGKPATAVRKVQETMEK-GTRFFAGGILSGEALAMGKEAEKGGSI 120 + GK + D + K A K +E ++ G GG+ S +LAMGK A + + Sbjct: 66 GAINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKKV 125 Query: 121 FITT-AGADEITGSDCNRATFRWSVPTFGAIEQTVRPLLEKMPNAKRWYTITPQYVFGDG 179 FI+ AG T +CN T +++ T T + + K WY +T Y FG Sbjct: 126 FISVGAGTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQ--GGKSWYFLTADYAFGTS 183 Query: 180 LLSAAKAIFKEKGIEHVGNSYHSLAEKEFSGYLTNAMAAKPDVLLLLNFGSQSSDTLRQA 239 L + K G VG + LA +FS +L A ++K +L L G + ++ A Sbjct: 184 LEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAA 243 Query: 240 VSFGMKNNCTILMAWASGLEQF----ETLGADICDGVYF-GAQYWHAID---APFNKEFV 291 FG+ N T+ +A GL F +LG + G+Y YW D A N+ F+ Sbjct: 244 NEFGV--NKTMKLA---GLLIFINDTHSLGLSLTQGMYLTDGWYWDLNDQTRAWANRYFM 298 Query: 292 KTVNDALKIDPNYSLAGSYICTKIVLDAIIKANSTDPKAVIAAMEGMKYEGLTGTEEIRK 351 K +K P+ AG L A+ STD V+ + + + + + Sbjct: 299 K-----MKKMPSMFQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVR 353 Query: 352 GDHQVIKNYYLLKGKAKSKMRNKNDYADIISS 383 D +++ + YL++ K S+ + DY ++ + Sbjct: 354 PDGRMVHDMYLMEVKKPSESKRPWDYYKLVQT 385 >gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 410 Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 104/388 (26%), Positives = 164/388 (42%), Gaps = 20/388 (5%) Query: 8 LKLSALAAPGALSYTDV--FAQ-ADAIQFGCPVPMSGPFAANGKY-----ADMGMKLVLQ 59 L +A+A +L+ T + +AQ A+ ++ G MSGP++A G A M ++ L+ Sbjct: 10 LTAAAVACTVSLAATAIPAWAQDANTVKIGVLTDMSGPYSAMGGQGSVVAAKMAVEDCLK 69 Query: 60 KYGKVLGKNLSYTTLDTEGKPATAVRKVQETMEKG-TRFFAGGILSGEALAMGKE-AEKG 117 K G + + D + KP V + +E +++ A S ALA+ K +KG Sbjct: 70 NECK--GMKIEILSADNQNKPDVGVTRAREWLDRDKVEAIADLTNSSVALAVQKLIKDKG 127 Query: 118 GSIFITTAGADEITGSDCNRATFRWSVPTFGAIEQTVRPLLEKMPNAKRWYTITPQYVFG 177 G + +T ++C F W T+ L K+ N K WY +T Y FG Sbjct: 128 GIAMYSGPATGALTTAECAPNGFHWMFDTYSQAAGAAA-ALTKLGN-KSWYFVTVDYAFG 185 Query: 178 DGLLSAAKAIFKEKGIEHVGNSYHSLAEKEFSGYLTNAMAAKPDVLLLLNFGSQSSDTLR 237 L A + K G VG+ H L +FS +L A A+K V+ L + G+ + ++ Sbjct: 186 HSLEKDASDVVKANGGTVVGSVRHPLNASDFSSFLLQAQASKAQVIGLADGGTDVVNAIK 245 Query: 238 QAVSFGMKNNCTILMAWASGLEQFETLGADICDG-VYFGAQYWHAIDA--PFNKEFVKTV 294 QA SF + L+A L LG + G VY YW + F+K F Sbjct: 246 QARSFAVGGKDQRLVALLVFLSDVHALGLEAAQGLVYTDGFYWDYDEQTRAFSKRFESQF 305 Query: 295 NDALKIDPNYSLAGSYICTKIVLDAIIKANSTDPKAVIAAMEGMKYEGLTGTEEIRKGDH 354 + I P AG Y L A A ++D K V M + + D Sbjct: 306 KN---IKPTMVQAGVYSSVYQFLKARAAAKTSDWKVVAQKMREIPIADAVMRNASIRPDG 362 Query: 355 QVIKNYYLLKGKAKSKMRNKNDYADIIS 382 +VI + YL + K ++ + DY ++S Sbjct: 363 RVIHDMYLYQVKTPAESKGPWDYLKLLS 390 >gi|300314071|ref|YP_003778163.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 402 Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 87/364 (23%), Positives = 158/364 (43%), Gaps = 18/364 (4%) Query: 29 DAIQFGCPVPMSGPFA-ANGKYADMGMKLVLQKYGKVL-GKNLSYTTLDTEGKPATAVRK 86 D I+ G +SG ++ +G+ +K+ + G + GK + D + K A K Sbjct: 29 DVIKIGFITDISGVYSDIDGQGGAEAIKMAIADMGGAINGKKIELLVADHQNKADVAASK 88 Query: 87 VQETM-EKGTRFFAGGILSGEALAMGKEAEKGGSIFITT-AGADEITGSDCNRATFRWSV 144 +E ++G GG SG ALA K A + +++ AG+ +T +C+ T ++ Sbjct: 89 AREWFDQQGVDMLIGGTNSGTALASAKVAAEKKKVYMQIGAGSARLTNEECSPYTVHYAY 148 Query: 145 PTFGAIEQTVRPLLEKMPNAKRWYTITPQYVFGDGLLSAAKAIFKEKGIEHVGNSYHSLA 204 T + T ++++ K W+ +T Y FG L S + K G VG H L Sbjct: 149 DTVALAKGTGSAVVKQ--GGKSWFFLTADYAFGHSLESDTANVVKASGGTVVGAVKHPLG 206 Query: 205 EKEFSGYLTNAMAAKPDVLLLLNFGSQSSDTLRQAVSFGMKNNCTILMAWASGLEQF--- 261 +FS +L A ++K ++ L N G ++++ A FG+ + +GL F Sbjct: 207 ASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKAANEFGITKTAKL-----AGLLVFIND 261 Query: 262 -ETLGADICDGVYF-GAQYWHAIDAPFNKEFVKTVNDALKIDPNYSLAGSYICTKIVLDA 319 +L +G+Y + YW A + + F K K P+ A Y L Sbjct: 262 VHSLTLKNTEGLYLTDSWYWDANEE--TRAFAKRYFAVRKKMPSSLQAADYSAALQYLKV 319 Query: 320 IIKANSTDPKAVIAAMEGMKYEGLTGTEEIRKGDHQVIKNYYLLKGKAKSKMRNKNDYAD 379 + + + D V+AA+ K+ + + D +V+ + YL + KA+S+ + DY Sbjct: 320 VKEIGTDDSDKVMAALRKAKFNDMYQKNGYLRADGRVMHDMYLYQVKAQSESKYPWDYYK 379 Query: 380 IISS 383 ++ + Sbjct: 380 LVQT 383 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,186,338 Number of extensions: 48611 Number of successful extensions: 165 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 13 Length of query: 398 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 311 Effective length of database: 1,207,925 Effective search space: 375664675 Effective search space used: 375664675 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)