BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0208.p (255 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC t... 439 e-124 gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 184 6e-48 gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPa... 181 4e-47 gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC t... 177 6e-46 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 166 2e-42 >gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 439 bits (1128), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/255 (83%), Positives = 230/255 (90%) Query: 1 MNTPILKAVNVTKRYGKFTAVNNITLDILPGTVHSVIGPNGAGKTTLFHTLTGTTPITEG 60 M+ PIL+AVNVTKRYGKFTAVN ITLDI GTVHSVIGPNGAGKTTLFHTLTGTTPITEG Sbjct: 1 MSRPILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEG 60 Query: 61 SILVEGEEVSHLPGYKRVRKGLARSFQVTSLFPNLSVHENLRLAAQGTRPAQALNPWKRP 120 SILVEGEEV+HLPG +RV+KGLARSFQVTSLFPNLSV ENLRLAAQG P ALNPWKR Sbjct: 61 SILVEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRA 120 Query: 121 ELLRQACAIAEQLVVRLNLQGVADRLSSELSHGQQRRLEVGMAMAGQPKVIFLDEPTSGM 180 E ACA+A++L+ RL+LQ VA R +ELSHGQQRRLEVGMAMAG+PKVIFLDEPTSGM Sbjct: 121 EQFSAACALADELLARLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGM 180 Query: 181 GIDDIADMKKLIHSLRDNYTVVLIEHNMDIVMDISDSITVMQQGQILAQGKPDEIRNDER 240 GIDDIA+MK+LIH LR +YTVVLIEHNMDIVMDISD ITVMQ GQILAQGKP EIR+DER Sbjct: 181 GIDDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDER 240 Query: 241 VRRAYLGSMITGGKA 255 VRRAYLGSMITGGKA Sbjct: 241 VRRAYLGSMITGGKA 255 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 184 bits (467), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 94/248 (37%), Positives = 155/248 (62%), Gaps = 1/248 (0%) Query: 1 MNTPILKAVNVTKRYGKFTAVNNITLDILPGTVHSVIGPNGAGKTTLFHTLTGTTPITEG 60 M IL+ N+TK + FTAV+ + L I G +H++IGPNGAGKTT F+ LT T G Sbjct: 1 MTDVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSG 60 Query: 61 SILVEGEEVSHLPGYKRVRKGLARSFQVTSLFPNLSVHENLRLAAQGTRPAQALNPWKRP 120 IL G +++ + R+G+ RSFQ++++FP++SV EN+R+ Q + + + WK Sbjct: 61 QILFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQ-RKLGTSFHFWKNG 119 Query: 121 ELLRQACAIAEQLVVRLNLQGVADRLSSELSHGQQRRLEVGMAMAGQPKVIFLDEPTSGM 180 E L+Q A QL+ ++L A + +L +G++R LE+ +A +P+++ LDEPT GM Sbjct: 120 ESLKQLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGM 179 Query: 181 GIDDIADMKKLIHSLRDNYTVVLIEHNMDIVMDISDSITVMQQGQILAQGKPDEIRNDER 240 G +D+ + LI + T++++EHNM ++ I D I+V+Q+G +LA+G +E+ + + Sbjct: 180 GHEDVDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQ 239 Query: 241 VRRAYLGS 248 V AY+GS Sbjct: 240 VMEAYMGS 247 >gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 181 bits (460), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 103/238 (43%), Positives = 148/238 (62%), Gaps = 1/238 (0%) Query: 10 NVTKRYGKFTAVNNITLDILPGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILVEGEEV 69 + K YG A ++ L+I G VH++IGPNGAGKTTL L+G G I + G+ + Sbjct: 14 GLKKNYGGLAATRDVDLEIAAGQVHAIIGPNGAGKTTLLSLLSGALAADAGEIHLFGQPM 73 Query: 70 SHLPGYKRVRKGLARSFQVTSLFPNLSVHENLRLAAQGTRPAQALNPWKRPELLRQACAI 129 RV GL RSFQ+TS+F LSV ENL++A Q + ++ + R A Sbjct: 74 HGHAEQARVAAGLVRSFQITSVFDELSVLENLQVAVQRGQH-RSYGFFHASAGDRAAREA 132 Query: 130 AEQLVVRLNLQGVADRLSSELSHGQQRRLEVGMAMAGQPKVIFLDEPTSGMGIDDIADMK 189 A + R+ L+ V +LSS+LSHG +RRL+VG+A+A P+V+ +DEP +GMG ++ DM Sbjct: 133 AMTVARRVGLEKVVHQLSSQLSHGARRRLDVGLAIACSPRVLLMDEPMAGMGHEESGDMI 192 Query: 190 KLIHSLRDNYTVVLIEHNMDIVMDISDSITVMQQGQILAQGKPDEIRNDERVRRAYLG 247 LI SL++ TVVL+EH+M+ V ++D +TV+ QG +LA G DEIR + V+ AYLG Sbjct: 193 ALIQSLKEELTVVLVEHDMEAVFALADRMTVLVQGAVLATGSVDEIRANAEVKLAYLG 250 >gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 177 bits (450), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 151/247 (61%), Gaps = 11/247 (4%) Query: 6 LKAVNVTKRYGKFTAVNNITLDILPGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILVE 65 L+ ++KR+G F A ++I+L PG H++IGPNGAGKTT + LTG + G + Sbjct: 12 LRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGGFAPSSGRVWFG 71 Query: 66 GEEVSHLPGYKRVRKGLARSFQVTSLFPNLSVHENLRLAAQGTRPAQALNPW-----KRP 120 GE+++ LP + RV++G+ R+FQ+ +LF L+V E++ LA Q R Q W + Sbjct: 72 GEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQ--YKWYQTVASQT 129 Query: 121 ELLRQACAIAEQLVVRLNLQGVADRLSSELSHGQQRRLEVGMAMAGQPKVIFLDEPTSGM 180 E++ +A A L+ L L A+ L+ L++G+QR +E+ +A+A QPKV+ LDEP +G+ Sbjct: 130 EVVDEAMA----LLASLKLAQEANSLTRNLAYGKQRLVEIALALATQPKVLLLDEPAAGI 185 Query: 181 GIDDIADMKKLIHSLRDNYTVVLIEHNMDIVMDISDSITVMQQGQILAQGKPDEIRNDER 240 + ++ ++I L T+V IEH+M +V ++ ITV+ G++L +G P EI D R Sbjct: 186 PSAESRELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADPR 245 Query: 241 VRRAYLG 247 V+ YLG Sbjct: 246 VKEVYLG 252 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 166 bits (420), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 154/251 (61%), Gaps = 10/251 (3%) Query: 5 ILKAVNVTKRYGKFTAVNNITLDILPGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILV 64 +L+ N++ R+G AV+ ++L + V ++IGPNGAGKTT+F+ ++G T G I++ Sbjct: 8 MLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEIML 67 Query: 65 EGEEVSHLPGYKRVRKGLARSFQVTSLFPNLSVHENLRLAAQGTRPAQALN------PWK 118 +G ++ P ++ ++GL R+FQ LF +++V ENL +A L+ ++ Sbjct: 68 DGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPAYR 127 Query: 119 RPELLRQACAIAEQLVVRLNLQGVADRLSSELSHGQQRRLEVGMAMAGQPKVIFLDEPTS 178 + E ++A A + +L L +A+R + LS+G QRR+E+ M +P+++ LDEP + Sbjct: 128 KSE--QEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAA 185 Query: 179 GMGIDDIADMKKLIHSLRDNY--TVVLIEHNMDIVMDISDSITVMQQGQILAQGKPDEIR 236 G+ + ++ +LI LR + V+LIEH+M ++M ISD I VM+ G+ + G P+++R Sbjct: 186 GLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVR 245 Query: 237 NDERVRRAYLG 247 +DERV +AYLG Sbjct: 246 SDERVIKAYLG 256 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 752,716 Number of extensions: 29410 Number of successful extensions: 517 Number of sequences better than 1.0e-08: 126 Number of HSP's gapped: 298 Number of HSP's successfully gapped: 136 Length of query: 255 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 172 Effective length of database: 1,226,865 Effective search space: 211020780 Effective search space used: 211020780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)