BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0207.p (234 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 427 e-121 gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPa... 227 8e-61 gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 216 1e-57 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 203 1e-53 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 199 1e-52 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 427 bits (1097), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/234 (87%), Positives = 221/234 (94%) Query: 1 MILNVQDIHGYYGKSHVLQGVSLQVAAGEVVTLLGRNGAGKSTTLKSIVGVVQPRQGKVM 60 MIL V+D+HGYYGKSH+LQGVSLQV AGEVVTLLGRNGAGK+TTLKSIVGVV P QG+V+ Sbjct: 1 MILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVL 60 Query: 61 FEGNNVAGLPAYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKDSAWGLEDVYKIFPRL 120 FEG ++GLP+YKIAARGVCLVPEHRGIFKLLTVEENLTMAARK+SAWGLE++Y IFPRL Sbjct: 61 FEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKESAWGLEEIYAIFPRL 120 Query: 121 KERRKNGGGQLSGGEQQMLAIARALMTHPKVLMLDEPVEGLAPVIVDEIVAQIKLIKATG 180 KERRKNGGGQLSGGEQQMLAIARALMTHP+VLMLDEPVEGLAPVIVDEIVAQI+ IKATG Sbjct: 121 KERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIKATG 180 Query: 181 MSIILVEQNLEVCTQLADRHYIVEQGRIAYTATNAEFLADDSAKDRYLGVNLAA 234 MSIILVEQNLEVCTQLADRHYIVEQGRI Y +NAEFLAD+ KDRYLGVNLAA Sbjct: 181 MSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLGVNLAA 234 >gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 227 bits (578), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 116/233 (49%), Positives = 163/233 (69%), Gaps = 4/233 (1%) Query: 2 ILNVQDIHGYYGKSHVLQGVSLQVAAGEVVTLLGRNGAGKSTTLKSIVGVVQPRQGKVMF 61 +L V+ + G YG S VL G+ +QV GEVVTLLGRNG GK+TTL++I+G+ +P G V F Sbjct: 4 LLEVEGLTGGYGASQVLFGIDMQVREGEVVTLLGRNGMGKTTTLRTILGLNRPTGGVVRF 63 Query: 62 EGNNVAGLPAYKIAARGVCLVPEHRGIFKLLTVEENLT-MAARK---DSAWGLEDVYKIF 117 G + A IA RG+ +VPE R IFK L+VEENL+ AAR+ D+ W LE +Y+ F Sbjct: 64 RGEAIHSASADAIARRGMAIVPEGRQIFKNLSVEENLSAFAARRNGRDNPWTLEKIYQQF 123 Query: 118 PRLKERRKNGGGQLSGGEQQMLAIARALMTHPKVLMLDEPVEGLAPVIVDEIVAQIKLIK 177 PRLKERR NGGGQLSGGEQQMLAI RALMT+P +L+LDE EGLAP++ +EI + +K ++ Sbjct: 124 PRLKERRHNGGGQLSGGEQQMLAIGRALMTNPHLLILDEATEGLAPLVREEIWSCLKALR 183 Query: 178 ATGMSIILVEQNLEVCTQLADRHYIVEQGRIAYTATNAEFLADDSAKDRYLGV 230 G++II++++ ++ AD+H I+E+G++ + +A+ D+YL V Sbjct: 184 EYGLTIIVIDKYIKRLIGFADQHTILEKGKVVWQGDSAQLSVQTELWDQYLSV 236 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 216 bits (550), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 107/233 (45%), Positives = 152/233 (65%), Gaps = 3/233 (1%) Query: 1 MILNVQDIHGYYGKSHVLQGVSLQVAAGEVVTLLGRNGAGKSTTLKSIVGVVQPRQGKVM 60 ++L + D+ +YG+SH+L V+L V GEVVTLLGRNGAG++TTL+SI+G+V R+G + Sbjct: 10 LVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIK 69 Query: 61 FEGNNVAGLPAYKIAARGVCLVPEHRGIFKLLTVEENLTM---AARKDSAWGLEDVYKIF 117 G L +KIA GV PE RGIF L+ EENL + ++ D ++++Y++F Sbjct: 70 INGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSIDEIYEMF 129 Query: 118 PRLKERRKNGGGQLSGGEQQMLAIARALMTHPKVLMLDEPVEGLAPVIVDEIVAQIKLIK 177 P LKERR + G +LSGGEQQMLA+AR L T ++L+LDE EGLAPVIV + I +K Sbjct: 130 PNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITTLK 189 Query: 178 ATGMSIILVEQNLEVCTQLADRHYIVEQGRIAYTATNAEFLADDSAKDRYLGV 230 A G +I++VEQN LADR Y++E G+I + +++ A + LGV Sbjct: 190 AKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELLGV 242 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 203 bits (516), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 104/233 (44%), Positives = 147/233 (63%), Gaps = 4/233 (1%) Query: 1 MILNVQDIHGYYGKSHVLQGVSLQVAAGEVVTLLGRNGAGKSTTLKSIVGVVQPRQGKVM 60 M+L +H +YG L GVSL V GE+VTL+G NGAGK+T L ++ G + G+V+ Sbjct: 1 MMLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVI 60 Query: 61 FEGNNVAGLPAYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKDS----AWGLEDVYKI 116 FEG ++ L ++I RG+ + PE R +F LTV ENL M A S G+E V+ + Sbjct: 61 FEGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGL 120 Query: 117 FPRLKERRKNGGGQLSGGEQQMLAIARALMTHPKVLMLDEPVEGLAPVIVDEIVAQIKLI 176 FPRLKER G +SGGEQQMLAI RALM+ P++L+LDEP GLAP+++ +I I+ I Sbjct: 121 FPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTI 180 Query: 177 KATGMSIILVEQNLEVCTQLADRHYIVEQGRIAYTATNAEFLADDSAKDRYLG 229 + +G+++ LVEQN +ADR Y++E G + + T A LA+ + YLG Sbjct: 181 RESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 199 bits (506), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 99/222 (44%), Positives = 150/222 (67%), Gaps = 4/222 (1%) Query: 2 ILNVQDIHGYYGKSHVLQGVSLQVAAGEVVTLLGRNGAGKSTTLKSIVGVVQPRQGKVMF 61 +L VQ +HG+Y +H+L G+ L++ AGEVV L+GRNGAGKSTTLK+++G+++ RQG++ Sbjct: 5 LLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQIRL 64 Query: 62 EGNNVAGLPAYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKDSA----WGLEDVYKIF 117 G ++ L ++ A G+ VPE R IF L+V ENL + W + ++++F Sbjct: 65 AGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQALFELF 124 Query: 118 PRLKERRKNGGGQLSGGEQQMLAIARALMTHPKVLMLDEPVEGLAPVIVDEIVAQIKLIK 177 P L + GG++SGGEQQML IAR LM +P++L+LDEP EG+APVIV+++ A I+ +K Sbjct: 125 PNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQELK 184 Query: 178 ATGMSIILVEQNLEVCTQLADRHYIVEQGRIAYTATNAEFLA 219 +G++I+L EQNL + + DR Y+++QGRI T A A Sbjct: 185 RSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQA 226 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 716,903 Number of extensions: 29504 Number of successful extensions: 487 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 312 Number of HSP's successfully gapped: 136 Length of query: 234 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 152 Effective length of database: 1,231,600 Effective search space: 187203200 Effective search space used: 187203200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)