BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0206.p (418 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313936|ref|YP_003778028.1| amidohydrolase [Herbaspirillum ... 774 0.0 gi|300312555|ref|YP_003776647.1| bifunctional OHCU decarboxylase... 189 4e-49 gi|300313822|ref|YP_003777914.1| N-carbamoyl-L-amino acid amidoh... 159 5e-40 >gi|300313936|ref|YP_003778028.1| amidohydrolase [Herbaspirillum seropedicae SmR1] Length = 419 Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/418 (88%), Positives = 389/418 (93%) Query: 1 MDMKTSITNLRIDGKRLWNSLMDLGAIGATPKGGVCRLALTDLDKQGRDLVSSWAKQEGM 60 MDM T I+ LRIDG RLW+SLM+L IGAT KGGVCRLALTDLDKQGRDLVSSWA+ EGM Sbjct: 1 MDMNTQISTLRIDGARLWDSLMELARIGATAKGGVCRLALTDLDKQGRDLVSSWARAEGM 60 Query: 61 SVVVDQIGNIFMRRAGRNNDLPPVVTGSHIDTQPTGGKFDGNYGVLAGMEVIRTLNQHNI 120 SVVVDQIGNIFMRR GRNN LPPV+TGSHIDTQPTGGKFDGNYGVLAG+EV+RTLNQHNI Sbjct: 61 SVVVDQIGNIFMRRPGRNNALPPVMTGSHIDTQPTGGKFDGNYGVLAGIEVVRTLNQHNI 120 Query: 121 QTEAPIEVAVWTNEEGSRFVPVMMGSGVFCGAFTLEHAYGATDVDGKNVKDELTRIGYIG 180 QTEAPIEVAVWTNEEGSRFVPVMMGSGVFCGAFTL+HAY ATDV+GK V+DEL RIGYIG Sbjct: 121 QTEAPIEVAVWTNEEGSRFVPVMMGSGVFCGAFTLDHAYNATDVEGKKVRDELERIGYIG 180 Query: 181 EQKCGDHPIGAYYEAHIEQGPVLENADTVIGVVPAVLGLSWYDCTVTGFESHAGPTPMEI 240 EQ CGDHPIGAYYEAHIEQGPVLENADTVIGVVPAVLGLSWYDCTVTGFESHAGPTPMEI Sbjct: 181 EQVCGDHPIGAYYEAHIEQGPVLENADTVIGVVPAVLGLSWYDCTVTGFESHAGPTPMEI 240 Query: 241 RKDALQVSTYIMQEVVAIANRYPPYGRGTVGQVQVMPNSRNVIPGQVKFSIDLRNVSDET 300 RKDALQVSTYIMQEVVAIA+RY PYGRGTVGQVQVMPNSRNVIPGQVKFSIDLRNVS+ + Sbjct: 241 RKDALQVSTYIMQEVVAIAHRYAPYGRGTVGQVQVMPNSRNVIPGQVKFSIDLRNVSEAS 300 Query: 301 LNQMHEDLLACLEQTRQKTGLKIELERVSYFPPCPFHPDCVGEVRNASAMLGYATMDVVS 360 L +MHEDLLA LE R+KTGL IELERVSYFPPCPFHPDCV +VR ASA LGY TMDVVS Sbjct: 301 LTRMHEDLLAYLEAMRKKTGLSIELERVSYFPPCPFHPDCVDKVRAASAALGYKTMDVVS 360 Query: 361 GAGHDAIYAARLVPAGMIFVPCKDGVSHNEIEDAKPEHLEAGANVLLHAMLATAKVVA 418 GAGHDAIYAARL PAGMIFVPCKDGVSHNEIEDA+PEHLEAG NVLL AMLA+A VV+ Sbjct: 361 GAGHDAIYAARLAPAGMIFVPCKDGVSHNEIEDARPEHLEAGCNVLLQAMLASAGVVS 418 >gi|300312555|ref|YP_003776647.1| bifunctional OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase [Herbaspirillum seropedicae SmR1] Length = 587 Score = 189 bits (480), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 123/391 (31%), Positives = 199/391 (50%), Gaps = 8/391 (2%) Query: 23 DLGAIGATPKGGVCRLALTDLDKQGRDLVSSWAKQEGMSVVVDQIGNIFMRRAGRNNDLP 82 ++GA+ + +G + LT+ ++ ++ W ++ GM V +D +GN+ R + Sbjct: 189 EIGAL-SEEEGALTCTYLTETHQRTAAQIAQWMREAGMQVHIDAVGNVVGRYQSPHPQAK 247 Query: 83 PVVTGSHIDTQPTGGKFDGNYGVLAGMEVIRTLNQHNIQTEAPIEVAVWTNEEGSRFVPV 142 ++TGSH DT GGK+DG G+L + V++ L++ +EV ++ EEG RF Sbjct: 248 TLLTGSHYDTVRNGGKYDGREGILLPIAVVKYLHERGETLPFHLEVIGFSEEEGVRFKST 307 Query: 143 MMGSGVFCGAFTLEHAYGATDVDGKNVKDELTRIGY----IGEQKCGDHPIGAYYEAHIE 198 +GS G F + D + +++ + + G+ I + I AY E HIE Sbjct: 308 FLGSNAITGHFDMA-LLDLRDKEDVTMRELIIQAGHDVAAIPQIARDPAEILAYVEVHIE 366 Query: 199 QGPVLENADTVIGVVPAVLGLSWYDCTVTGFESHAGPTPMEIRKDALQVSTYIMQEVVAI 258 QGPVL D +G+V ++ G S Y + G SHAG TPM++RKDA + I+ V Sbjct: 367 QGPVLLKRDLPVGIVTSIAGSSRYLVDLKGVASHAGTTPMDMRKDAAAAAAEIILYVEQR 426 Query: 259 ANRYPPYGR-GTVGQVQVMPNSRNVIPGQVKFSIDLRNVSDETLNQMHEDLLACLEQTRQ 317 ++ GTVGQ+QV S NVIPG + S+D+R +DE +D+LA +E+ Sbjct: 427 CSQDQHAALVGTVGQLQVPRGSTNVIPGACQLSLDIRAATDEVRLAAVKDILAKIEEICT 486 Query: 318 KTGLKIELERVSYFPPCPFHPDCVGEVRNASAMLGYATMDVVSGAGHDAIYAARLVPAGM 377 + + ++LE P P P + ++ A+ G ++ SGAGHDA+ RL M Sbjct: 487 RRSIDLKLEETLSAPAAPCAPWLMAQLSAATQRAGVPPFELASGAGHDAMAMVRLTDVCM 546 Query: 378 IFVPCKD-GVSHNEIEDAKPEHLEAGANVLL 407 +F C + G+SHN +E + E +LL Sbjct: 547 LFTRCGNGGISHNPLETMTADDAEVSGQILL 577 >gi|300313822|ref|YP_003777914.1| N-carbamoyl-L-amino acid amidohydrolase [Herbaspirillum seropedicae SmR1] Length = 417 Score = 159 bits (401), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 119/390 (30%), Positives = 178/390 (45%), Gaps = 23/390 (5%) Query: 33 GGVCRLALTDLDKQGRDLVSSWAKQEGMSVVVDQIGNIFMR--RAGRNNDLPPVVTGSHI 90 G + R LT + ++ W ++ GM V D GN+ R A + P VTGSH Sbjct: 30 GMLTRTYLTPQHQAAAAALARWMEEAGMRVRRDNAGNVIGRYEAAPGHESAPSFVTGSHF 89 Query: 91 DTQPTGGKFDGNYGVLAGMEVIRTLNQHNIQTEAPIEVAVWTNEEGSRFVPVMMGSGVFC 150 DT GG +DGN G++ + I ++ + PIEV + EEG RF ++GS Sbjct: 90 DTVRNGGWYDGNLGIVLPLACIARWHRQGQRFAFPIEVIGFAEEEGVRFKATLLGSRTVA 149 Query: 151 GAF---TLEHAYGATDVDGKNVKDELTRIGYIGEQKCGDH----PIGAYYEAHIEQGPVL 203 G F LE+ D DG ++ + G + D + A+ E HIEQGP+L Sbjct: 150 GTFDQAVLEN----RDSDGVTMRAAIRAAGLDPDGIAADAWQPGSMAAFVEVHIEQGPLL 205 Query: 204 ENADTVIGVVPAVLGLSWYDCTVTGFESHAGPTPMEIRKDAL----QVSTYIMQEVVAIA 259 N D +GVV A+ G S + V G HAG PM +R+DA ++ YI + Sbjct: 206 LNEDLPVGVVTAISGASRFMAEVHGLAGHAGTVPMHLRRDAAMAAAEIGLYIERRC---- 261 Query: 260 NRYPPYGRGTVGQVQVMPNSRNVIPGQVKFSIDLRNVSDETLNQMHEDLLACLEQTRQKT 319 P GT+G ++V+ + NV+PG FSID+R D D+ A +++ + Sbjct: 262 -SIKPELVGTMGLLEVVQGAANVVPGLASFSIDIRAEDDSDRLAAVADVKAEIDRIAARR 320 Query: 320 GLKIELERVSYFPPCPFHPDCVGEVRNASAMLGYATMDVVSGAGHDAIYAARLVPAGMIF 379 +++ L + P P + + A G+ + SGAGHDA+ A L M+F Sbjct: 321 QVQLALRQTHEAASVPCAPRLQAALAQSIAAAGWPVRHLPSGAGHDAMALAGLADVAMLF 380 Query: 380 VPCKD-GVSHNEIEDAKPEHLEAGANVLLH 408 V C + G+SH+ E A V H Sbjct: 381 VRCGNGGISHHPDETMTEADAAIAAQVFSH 410 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,414,561 Number of extensions: 62967 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 3 Length of query: 418 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 330 Effective length of database: 1,203,190 Effective search space: 397052700 Effective search space used: 397052700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)