BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0204.p (650 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314042|ref|YP_003778134.1| signal transduction protein con... 316 3e-87 gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [... 281 1e-76 gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodies... 274 2e-74 gi|300312026|ref|YP_003776118.1| signal transduction protein con... 272 6e-74 gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protei... 265 9e-72 >gi|300314042|ref|YP_003778134.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 948 Score = 316 bits (810), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 167/387 (43%), Positives = 244/387 (63%), Gaps = 21/387 (5%) Query: 181 VMSXLGHLAGDRMIIQVAARLRNALRPDHPGLSASSAEEGAKGISPSYTLARMGGDEFTV 240 V LGH AGD ++ VA RLR A+R + T+AR+GGDEF + Sbjct: 564 VNDTLGHKAGDTLLRTVAGRLRAAVRE-------------------ADTVARLGGDEFIM 604 Query: 241 LLSDIDDVGAAVRIAERIQAAMALPFLIRDQEIYASASTGIVFSDVGHTLADEVLRDADL 300 +L + D++ R +RI A+A P + ++ + S G+ T + +++ AD+ Sbjct: 605 ILPEQDELTLDTRSLQRIMDAVAAPVTLGGHTLFMTCSVGVACYPNDGTDGETLIKHADI 664 Query: 301 AVHRAKAMGKSRYEVFDRSMRKGEVSRLAIETALRHALKNNEFVLHYQPIIELQGGIIVG 360 A++R K G++ ++ + +M + + RL IE LR+AL + EF+LHYQP ++L G ++G Sbjct: 665 AMYRGKQTGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASGRVIG 724 Query: 361 VEALVRWQRGPDELVYPGDFIDVAEDTGLILHIGMWVLREACRQMHQWHRQFPRAKPLTI 420 EAL+RWQ +V P FI +AE+TGLIL IG WVLR AC Q QW Q +++ Sbjct: 725 SEALIRWQHPQLGMVSPARFIGLAEETGLILPIGAWVLRAACTQCRQW--QLGGYADISV 782 Query: 421 SVNISPRQFVQPNLVDQIKQIVAETGIDPNTLRLEITESVTMGDVERTIRILSQLREIGV 480 SVN+S QF+Q +LV I ++ +TG+ P +L LE+TES+ M DVE I IL+ L+++GV Sbjct: 783 SVNLSVGQFLQKDLVSSIADVLEDTGLPPESLELELTESLMMTDVEHAIGILAGLKKLGV 842 Query: 481 RFSVDDFGTGYSSLSYLHRFPLDVLKIDRSFVMRMNEDHERLQIVQTIMTLARNLGIEVV 540 R S+DDFGTGYSSL+YL RFP+DVLKIDRSFV + D + I +I++LAR+L + V+ Sbjct: 843 RLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLKLRVI 902 Query: 541 AEGTETEMQVDHLRNIGCDFGQGFFFS 567 AEG ET+ Q+D+LR+ GCD QG+ FS Sbjct: 903 AEGVETDEQLDYLRHYGCDEIQGYLFS 929 >gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1036 Score = 281 bits (719), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 159/394 (40%), Positives = 232/394 (58%), Gaps = 26/394 (6%) Query: 185 LGHLAGDRMIIQVAARLRNALRPDHPGLSASSAEEGAKGISPSYTLARMGGDEFTVLLSD 244 +GH GD ++ QVA RL +R + T+AR+GGDEF V+L Sbjct: 648 IGHEKGDTLLKQVAQRLLANVREND-------------------TVARVGGDEFVVVLEG 688 Query: 245 IDDVG--AAVR---IAERIQAAMALPFLIRDQEIYASASTGIVFSDVGHTLADEVLRDAD 299 ++++ AA + I E+I A+ + + D E +AS G DE+++ AD Sbjct: 689 LNELQQEAATQTRAIGEKILTALGSTYQLDDVEYRTTASIGATVFLGRAASVDELMKQAD 748 Query: 300 LAVHRAKAMGKSRYEVFDRSMRKGEVSRLAIETALRHALKNNEFVLHYQPIIELQGGIIV 359 LA+++AK G++ FD +M+ + R +E LR A+ N+ +LHYQP + ++GG + Sbjct: 749 LAMYKAKETGRNALRFFDPAMQTAVLERATLEAGLRKAIDGNQLLLHYQPQV-VEGGRVT 807 Query: 360 GVEALVRWQRGPDELVYPGDFIDVAEDTGLILHIGMWVLREACRQMHQWHRQFPRAKPLT 419 G E LVRWQ +V PGDFI +AE+TGLIL +G WVL ACRQ+ W Q P+ L+ Sbjct: 808 GAEVLVRWQHPQRGMVPPGDFIPLAEETGLILSLGNWVLETACRQLATWAAQ-PQMADLS 866 Query: 420 ISVNISPRQFVQPNLVDQIKQIVAETGIDPNTLRLEITESVTMGDVERTIRILSQLREIG 479 I+VN+S Q +P+ V + + TG +P L+LE+TES+ + +VE I+ + L+ G Sbjct: 867 IAVNVSAPQLREPDFVQTVLDTIERTGANPRRLKLELTESLLVDNVEDIIQKMFALKAYG 926 Query: 480 VRFSVDDFGTGYSSLSYLHRFPLDVLKIDRSFVMRMNEDHERLQIVQTIMTLARNLGIEV 539 V FS+DDFGTGYSSLSYL R PL+ LKID+SFV + D I +TI+ LA++LG+ V Sbjct: 927 VEFSLDDFGTGYSSLSYLKRLPLNQLKIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLGV 986 Query: 540 VAEGTETEMQVDHLRNIGCDFGQGFFFSRALAPE 573 +AEG ET+ Q L + GC QG+FF R + E Sbjct: 987 IAEGVETDAQRSFLADAGCHAYQGYFFCRPVTVE 1020 >gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein [Herbaspirillum seropedicae SmR1] Length = 701 Score = 274 bits (700), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 169/437 (38%), Positives = 247/437 (56%), Gaps = 35/437 (8%) Query: 162 ALRADIARSAGIRAAIAFP-------VMSXLGHLAGDRMIIQVAARLRNALRPDHPGLSA 214 ALR +AR G A+AF + LGH GD ++ VA RL+ LR Sbjct: 287 ALR--VARQKGALTAVAFVDLDQFKFINDSLGHQVGDELLKTVAQRLQACLRE------- 337 Query: 215 SSAEEGAKGISPSYTLARMGGDEFTVLLSDIDDVGAAV-RIAERIQAAMALPFLIRDQEI 273 + +AR GGDEF ++L + + A + + +RI AA+A P+ D+E Sbjct: 338 ------------ADMVARQGGDEFVLVLQNQTEGEAGIAEVMQRILAAVARPWQAGDREF 385 Query: 274 YASASTGIVFSDVGHTLADEVLRDADLAVHRAKAMGKSRYEVFDRSMRKGEVSRLAIETA 333 +AS G+ + +L+ AD A++RAK G++ ++ F M +RL + Sbjct: 386 QVTASIGVSRYPADGKDVESLLKHADSAMYRAKEQGRNNFQFFAPWMDSQVSNRLEMLIN 445 Query: 334 LRHALKNNEFVLHYQPIIELQGGIIVGVEALVRWQRGPDELVYPGDFIDVAEDTGLILHI 393 LR AL +EF L+YQP + LQ G ++G EAL+RW+ +V P FI AE+ GLI+ I Sbjct: 446 LRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRWESPQQGMVPPDRFIPFAEEAGLIVPI 505 Query: 394 GMWVLREACRQMHQWHRQ-FPRAKPLTISVNISPRQFVQPNLVDQIKQIVAETGIDPNTL 452 G WVLR ACRQ W + P P+ ++VN+SPRQ Q +L D + ++A++G+ + L Sbjct: 506 GEWVLRTACRQNQAWQQAGLP---PIPVAVNLSPRQLNQ-SLPDFVAGVLAQSGLAASWL 561 Query: 453 RLEITESVTMGDVERTIRILSQLREIGVRFSVDDFGTGYSSLSYLHRFPLDVLKIDRSFV 512 LEITE+V M D E+++ L L+ +G++ SVDDFGTGYSSLSYL RFP+D LKID+SFV Sbjct: 562 ELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGYSSLSYLRRFPVDALKIDKSFV 621 Query: 513 MRMNEDHERLQIVQTIMTLARNLGIEVVAEGTETEMQVDHLRNIGCDFGQGFFFSRALAP 572 + D + IV+ I++LA L + V+AEG E E Q L+ CD QG++F + + Sbjct: 622 RDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQHAFLKENACDEVQGYYFGKPMEV 681 Query: 573 ETVTXGGAEDQREAQQV 589 T +E Q +A QV Sbjct: 682 AVFTAWMSE-QAQAGQV 697 >gi|300312026|ref|YP_003776118.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1106 Score = 272 bits (696), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 158/384 (41%), Positives = 220/384 (57%), Gaps = 21/384 (5%) Query: 185 LGHLAGDRMIIQVAARLRNALRPDHPGLSASSAEEGAKGISPSYTLARMGGDEFTVLLSD 244 GH G+ ++ ++A R RN+LR LAR+GGDEF VL+ D Sbjct: 719 FGHETGEAVLQEIAQRFRNSLRELD-------------------ILARVGGDEFIVLVDD 759 Query: 245 IDDVGAAVRIAERIQAAMALPFLIRDQEIYASASTGIVFSDVGHTLADEVLRDADLAVHR 304 DD IA+++ PF+I QE S S GI A ++++AD+A++R Sbjct: 760 FDDPVQLGEIAQKLLTEARKPFIIDGQEAMLSVSIGIATYPGDGDNAQTLIKNADIAMYR 819 Query: 305 AKAMGKSRYEVFDRSMRKGEVSRLAIETALRHALKNNEFVLHYQPIIELQGGIIVGVEAL 364 AK GK Y F + V R+A+E LR A++ EFV+HYQP IEL G IVG EAL Sbjct: 820 AKHHGKDDYRFFSDEINTNTVERIALEAELRRAIERAEFVVHYQPKIELAEGRIVGAEAL 879 Query: 365 VRWQRGPDELVYPGDFIDVAEDTGLILHIGMWVLREACRQMHQWHRQFPRAKPLTISVNI 424 VRWQ L+ PG+FI +AE+T LI IG+ VL ACR + +Q + IS+N+ Sbjct: 880 VRWQHPLRGLLPPGEFITLAEETRLIDQIGLLVLDVACRDIGLMRQQ--QMTCGRISINL 937 Query: 425 SPRQFVQPNLVDQIKQIVAETGIDPNTLRLEITESVTMGDVERTIRILSQLREIGVRFSV 484 + QF L+D IK++V G P+ L EITES+ M + ER I I+ +R G S+ Sbjct: 938 TGSQFGDERLLDDIKEVVDRHGTPPSCLEFEITESMVMHNRERAIAIMDGIRAEGFTISI 997 Query: 485 DDFGTGYSSLSYLHRFPLDVLKIDRSFVMRMNEDHERLQIVQTIMTLARNLGIEVVAEGT 544 DDFGTGYSSL+YL RFP++ LKID+SF+ + ++ IVQ I+ ++ L ++VV EG Sbjct: 998 DDFGTGYSSLAYLKRFPVNTLKIDKSFINDIPDNPNSSAIVQAIIAMSHALNLKVVTEGV 1057 Query: 545 ETEMQVDHLRNIGCDFGQGFFFSR 568 ETE Q+ LR G D QG++FS+ Sbjct: 1058 ETEKQLQALREFGSDEYQGYYFSK 1081 >gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 695 Score = 265 bits (677), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 158/390 (40%), Positives = 222/390 (56%), Gaps = 24/390 (6%) Query: 185 LGHLAGDRMIIQVAARLRNALRPDHPGLSASSAEEGAKGISPSYTLARMGGDEFTVLLSD 244 LGH GDR++++VA RL ++ R + T+AR+GGDEF V+L D Sbjct: 315 LGHHVGDRLLVEVAQRLTSSSRAND-------------------TVARLGGDEF-VILVD 354 Query: 245 IDDVGAAVRIAERIQAAMALPFLIRDQEIYASASTGI-VFSDVGHTLADEVLRDADLAVH 303 ++ A+ +AE++ A+ PF + E+ SAS GI ++ + G T D V+ +AD A++ Sbjct: 355 LNTPEDAMGVAEKLVEAVNQPFKVDQHELRVSASVGIAIYPEDGATRHDLVI-NADAAMY 413 Query: 304 RAKAMGKSRYEVFDRSMRKGEVSRLAIETALRHALKNNEFVLHYQPIIELQGGIIVGVEA 363 K G++ Y F+ SM +L LR AL+ +F L YQP L G ++G EA Sbjct: 414 HTKRSGRNGYHFFEPSMNANAQQQLQWLQDLRVALERGQFRLVYQPKFSLPAGPVLGAEA 473 Query: 364 LVRWQRGPDELVYPGDFIDVAEDTGLILHIGMWVLREACRQMHQWHRQFPRAKPLTISVN 423 L+RW+ LV P FI +AE +GLIL IG WVL EACRQM +W T+SVN Sbjct: 474 LLRWEHPVHGLVAPDQFIGLAERSGLILPIGAWVLDEACRQMREWFAL--GYVDWTMSVN 531 Query: 424 ISPRQFVQPNLVDQIKQIVAETGIDPNTLRLEITESVTMGDVERTIRILSQLREIGVRFS 483 +S QF P+L++ ++ + + P L LE+TES M D E +++ L Q+ ++GV S Sbjct: 532 LSALQFADPHLLEVVRTTLERHQLPPPCLTLEVTESTAMHDTEASLQTLRQIADLGVEIS 591 Query: 484 VDDFGTGYSSLSYLHRFPLDVLKIDRSFVMRMNEDHERLQIVQTIMTLARNLGIEVVAEG 543 +DDFGTGYSSL YL R P + LKIDR FV + +D E IV I+ L R L + +VAEG Sbjct: 592 IDDFGTGYSSLLYLKRLPANELKIDRGFVRELRQDGEDAAIVSAIVALGRTLNLRIVAEG 651 Query: 544 TETEMQVDHLRNIGCDFGQGFFFSRALAPE 573 ET Q D L GCD QG+ R + PE Sbjct: 652 VETVEQQDFLTAAGCDALQGYLMGRPMTPE 681 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,985,807 Number of extensions: 82374 Number of successful extensions: 386 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 349 Number of HSP's successfully gapped: 20 Length of query: 650 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 559 Effective length of database: 1,188,985 Effective search space: 664642615 Effective search space used: 664642615 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)