BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0203.p (289 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 373 e-104 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 167 8e-43 gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 147 7e-37 gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra... 134 8e-33 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 118 5e-28 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 373 bits (957), Expect = e-104, Method: Compositional matrix adjust. Identities = 174/254 (68%), Positives = 210/254 (82%) Query: 1 MKNYKIGVRLGIGFIAMLMLMAVMVGIGVWRLQGIGDATDDMVKNALQKERDASRWHAAI 60 MKN KIGVRL IGFIA+LMLMAVMV +GVWRL IGDATDDM + AL+KERDA +WHAAI Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 61 KENGVRTFAVMRSDDAEFQKYFQTQIDAESKKVSDTQKRVEAAISSPEEKQLFDEVGKLR 120 KENGVRTFAVM+SDD FQ YFQ QIDA+S ++S QK VEAAI+ EEK+LFDEVGKLR Sbjct: 61 KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120 Query: 121 AVYRTTREDIFKMKTAGNAEEAKQLTNTKLVKMMDEYSGSVLKYANYQTEIINQAAQHIN 180 A YR TR+ IF +KTAG+ A+++T+T LVKMMD+Y+ VL+YA++Q ++I+Q A IN Sbjct: 121 AAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAIN 180 Query: 181 DSYQSGRTLLLSLGMIELILGGLLGWLLTLSITRPLNEAVSIAETVASGDLTSHIDGSGK 240 Y+SGR++LL+LG IE++LG L WLLT SITRPLN+AV+IAETVA+GDLTS ID S + Sbjct: 181 RDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSR 240 Query: 241 DETSKLLQALKTMN 254 DET KLL ALKTMN Sbjct: 241 DETGKLLAALKTMN 254 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 167 bits (424), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 97/252 (38%), Positives = 150/252 (59%) Query: 3 NYKIGVRLGIGFIAMLMLMAVMVGIGVWRLQGIGDATDDMVKNALQKERDASRWHAAIKE 62 N IG RL +GF +L ++ GIG+WRL + AT +M+ L+ ER + W+ + Sbjct: 6 NMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWYTNLVA 65 Query: 63 NGVRTFAVMRSDDAEFQKYFQTQIDAESKKVSDTQKRVEAAISSPEEKQLFDEVGKLRAV 122 RT A+ +S D YF ++ A SK + QK+VEA +S+PEEK LF ++G+LR + Sbjct: 66 GIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGELRKL 125 Query: 123 YRTTREDIFKMKTAGNAEEAKQLTNTKLVKMMDEYSGSVLKYANYQTEIINQAAQHINDS 182 Y ++R++I K K AGN EEA ++ + V Y ++ K ++Q + ++ A+ I+ Sbjct: 126 YLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAREIDAI 185 Query: 183 YQSGRTLLLSLGMIELILGGLLGWLLTLSITRPLNEAVSIAETVASGDLTSHIDGSGKDE 242 RTL+L L + L+LG + LTL IT+PL+ AV ++ VA GDL+S I + +DE Sbjct: 186 AAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAVTSRDE 245 Query: 243 TSKLLQALKTMN 254 T +LLQ+LK MN Sbjct: 246 TGQLLQSLKDMN 257 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 147 bits (372), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 99/255 (38%), Positives = 139/255 (54%), Gaps = 3/255 (1%) Query: 3 NYKIGVRLGIGFIAMLMLMAVMVGIGVWRLQGIGDATDDMVKNALQKERDASRWHAAIKE 62 N KIG RL +GF +L +V+V + +WRLQGI ATD+M+ L KER S W+ I Sbjct: 6 NMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWYRTIHT 65 Query: 63 NGVRTFAVMRSDDAEFQKYFQTQIDAESKKVSDTQKRVEAAISSPEEKQLFDEVGKLRAV 122 + RT A+ +S D +F A S+ ++ QK +EA I S +EK +F ++G++R Sbjct: 66 SVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLGEVRKD 125 Query: 123 YRTTREDIFKMKTAGNAEEAKQLTNTKLVKMMDEYSGSVLKYANYQTEIINQAAQHINDS 182 Y R+ I K K G EEA Q+ Y + + Q I+Q A HI Sbjct: 126 YIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAAHIQTV 185 Query: 183 YQSGRTLLLSLGMIELILGGLLGWLLTLSITRPLNEAVSIAETVASGDLTSHID---GSG 239 Y+ R L+L+L ++++LG L L L ITRPL +AV +AE VA+GDLT ID + Sbjct: 186 YRESRNLMLALAFLQVVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDERLAAR 245 Query: 240 KDETSKLLQALKTMN 254 DET KL+ AL M Sbjct: 246 GDETGKLMHALHAMT 260 >gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 134 bits (337), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 140/254 (55%) Query: 1 MKNYKIGVRLGIGFIAMLMLMAVMVGIGVWRLQGIGDATDDMVKNALQKERDASRWHAAI 60 +K+ +IG RLG GF +L+ V+ +G+WRL+ + T M+ L+ ER S+W+ + Sbjct: 2 IKDIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAVQTQQMMDVPLKTERLVSQWNTLL 61 Query: 61 KENGVRTFAVMRSDDAEFQKYFQTQIDAESKKVSDTQKRVEAAISSPEEKQLFDEVGKLR 120 RT V++S D E + + + A SK+ + T K VE ++S EEK++F + R Sbjct: 62 LIAIQRTTTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVAR 121 Query: 121 AVYRTTREDIFKMKTAGNAEEAKQLTNTKLVKMMDEYSGSVLKYANYQTEIINQAAQHIN 180 + T R+ I+ K G+A + ++L + V + ++ +++ I+Q + I Sbjct: 122 KQFLTIRDQIYAAKKQGDAAQVEELYQKQYVGIAKSTQDAMRALLDFERARIDQISAQIQ 181 Query: 181 DSYQSGRTLLLSLGMIELILGGLLGWLLTLSITRPLNEAVSIAETVASGDLTSHIDGSGK 240 S + ++ L ++ L+ G LLT SITRP++ A++I++ VA+GDLTS G+ Sbjct: 182 QDASSSQHQIMLLEVVILLCGIAFAVLLTRSITRPVHVALAISQRVAAGDLTSRAQAMGR 241 Query: 241 DETSKLLQALKTMN 254 DE +L+ +L+ M+ Sbjct: 242 DELGQLVASLQGMS 255 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 118 bits (296), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 142/257 (55%), Gaps = 10/257 (3%) Query: 3 NYKIGVRLGIGFIAMLMLMAVMVGIGVWRLQGIGDATDDMVKNALQKERDASRWHAAIKE 62 N I RL I F +++++A +V +G+ RL I A D +V + +K + + + Sbjct: 5 NLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISGKVDD 64 Query: 63 NGV--RTFAVMRSDDAEF---QKYFQTQIDAESKKVSDTQKRVEAAISSPEEKQLFDEVG 117 + R +M +D A+ QK ++ + AE+ K+ D R+ +++PE K D+V Sbjct: 65 VAISLRNQLLM-TDPAQIAAEQKTIES-LSAENTKLYDELTRL---VANPEAKAKLDKVT 119 Query: 118 KLRAVYRTTREDIFKMKTAGNAEEAKQLTNTKLVKMMDEYSGSVLKYANYQTEIINQAAQ 177 + R Y R+ I K++++G+ + A +L +++V + Y + + ++ Q ++++Q+ Sbjct: 120 ETRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQSVD 179 Query: 178 HINDSYQSGRTLLLSLGMIELILGGLLGWLLTLSITRPLNEAVSIAETVASGDLTSHIDG 237 +Y++ R +++ G++ + W ++ SITRPL+ AV +AETVA+GDLT+ I Sbjct: 180 QAEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIAA 239 Query: 238 SGKDETSKLLQALKTMN 254 DET +LLQAL MN Sbjct: 240 HSNDETGRLLQALAAMN 256 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.131 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 710,120 Number of extensions: 24044 Number of successful extensions: 194 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 177 Number of HSP's successfully gapped: 32 Length of query: 289 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 205 Effective length of database: 1,222,130 Effective search space: 250536650 Effective search space used: 250536650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)